Variant report

Variant	rs2773355
Chromosome Location	chr9:100336847-100336848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100335698..100337824-chr9:100348550..100351142,2	MCF-7	breast:
2	chr9:100331492..100333368-chr9:100335840..100338156,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10759781	0.81[ASN][1000 genomes]
rs10983030	0.82[ASN][1000 genomes]
rs1475544	0.81[ASN][1000 genomes]
rs2026132	0.80[ASN][1000 genomes]
rs2149986	0.93[ASN][1000 genomes]
rs2480721	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2805779	0.85[ASN][1000 genomes]
rs2805791	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2805801	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2805803	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2805806	0.94[ASN][1000 genomes]
rs913912	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs958346	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100326800-100337000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:100327000-100349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:100327200-100340000	Weak transcription	Fetal Stomach	stomach
4	chr9:100330400-100339400	Weak transcription	Brain Germinal Matrix	brain
5	chr9:100333400-100338400	Strong transcription	Ovary	ovary
6	chr9:100333400-100340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:100333600-100339400	Weak transcription	Pancreas	Pancrea
8	chr9:100333600-100341400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:100333600-100361800	Weak transcription	Gastric	stomach
10	chr9:100334000-100337400	Weak transcription	Adipose Nuclei	Adipose
11	chr9:100334200-100340800	Weak transcription	Psoas Muscle	Psoas
12	chr9:100334200-100356000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:100334400-100337000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:100334400-100338600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr9:100334400-100356000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:100334400-100356400	Weak transcription	HSMMtube	muscle
17	chr9:100334600-100337400	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:100334600-100337600	Weak transcription	GM12878-XiMat	blood
19	chr9:100334600-100337800	Strong transcription	Fetal Brain Female	brain
20	chr9:100334600-100339400	Weak transcription	Lung	lung
21	chr9:100334600-100353600	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:100334800-100338600	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:100334800-100355600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:100335000-100341800	Weak transcription	Fetal Heart	heart
25	chr9:100335400-100338200	Strong transcription	Left Ventricle	heart
26	chr9:100335400-100338400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:100335400-100341000	Weak transcription	Right Ventricle	heart
28	chr9:100335600-100338600	Weak transcription	Liver	Liver
29	chr9:100335600-100356600	Weak transcription	Brain Angular Gyrus	brain
30	chr9:100336000-100337400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:100336000-100337800	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:100336200-100337400	Weak transcription	Brain Anterior Caudate	brain
33	chr9:100336200-100337400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:100336200-100340200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:100336200-100349200	Weak transcription	K562	blood
36	chr9:100336200-100356200	Weak transcription	Aorta	Aorta
37	chr9:100336200-100360000	Weak transcription	Brain Substantia Nigra	brain
38	chr9:100336400-100337200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr9:100336800-100337200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:100336800-100337400	Enhancers	Primary T cells fromperipheralblood	blood

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