Variant report

Variant	rs10759781
Chromosome Location	chr9:100324654-100324655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100262480..100265797-chr9:100324164..100327795,3	K562	blood:
2	chr9:100316877..100321720-chr9:100323488..100327192,5	K562	blood:
3	chr9:100324071..100326251-chr9:100329455..100331958,2	K562	blood:
4	chr9:100293612..100296079-chr9:100323288..100324987,2	K562	blood:

Variant related genes	Relation type
ENSG00000136842	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10817771	0.83[JPT][hapmap]
rs12004491	0.82[ASN][1000 genomes]
rs1475545	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2149986	0.87[ASN][1000 genomes]
rs2773355	0.81[ASN][1000 genomes]
rs2805803	0.81[ASN][1000 genomes]
rs2805806	0.86[ASN][1000 genomes]
rs36035236	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7047577	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73656827	0.80[ASN][1000 genomes]
rs7865885	0.87[EUR][1000 genomes]
rs7869116	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7872629	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs867585	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100311800-100325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:100315600-100326200	Weak transcription	Esophagus	oesophagus
3	chr9:100319200-100327400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:100320000-100326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:100320000-100326200	Weak transcription	Pancreas	Pancrea
6	chr9:100320000-100326200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:100320000-100326600	Weak transcription	Gastric	stomach
8	chr9:100320400-100326400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:100320600-100326000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:100320800-100325600	Weak transcription	Aorta	Aorta
11	chr9:100321200-100325000	Strong transcription	K562	blood
12	chr9:100321400-100325400	Weak transcription	Adipose Nuclei	Adipose
13	chr9:100321600-100324800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:100321600-100325400	Weak transcription	Fetal Brain Female	brain
15	chr9:100321600-100326000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:100321600-100326400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:100321600-100331400	Weak transcription	Liver	Liver
18	chr9:100321800-100326200	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:100322000-100326000	Weak transcription	Fetal Brain Male	brain
20	chr9:100323200-100325000	Enhancers	Lung	lung
21	chr9:100323200-100325400	Enhancers	Right Atrium	heart
22	chr9:100323200-100325800	Enhancers	Brain Hippocampus Middle	brain
23	chr9:100323200-100326000	Enhancers	Brain Substantia Nigra	brain
24	chr9:100323200-100326200	Enhancers	Brain Cingulate Gyrus	brain
25	chr9:100323200-100327200	Enhancers	Left Ventricle	heart
26	chr9:100323200-100327400	Enhancers	Right Ventricle	heart
27	chr9:100323600-100325200	Genic enhancers	Brain Anterior Caudate	brain
28	chr9:100323600-100326400	Weak transcription	HSMMtube	muscle
29	chr9:100323800-100324800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:100323800-100325000	Weak transcription	Psoas Muscle	Psoas
31	chr9:100324000-100327600	Genic enhancers	Ovary	ovary
32	chr9:100324200-100324800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:100324200-100326200	Enhancers	Brain Germinal Matrix	brain
34	chr9:100324200-100327400	Weak transcription	GM12878-XiMat	blood
35	chr9:100324200-100333200	Weak transcription	Spleen	Spleen
36	chr9:100324400-100325800	Genic enhancers	Fetal Heart	heart
37	chr9:100324400-100326600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
38	chr9:100324400-100326800	Genic enhancers	Stomach Smooth Muscle	stomach
39	chr9:100324400-100328200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
40	chr9:100324400-100329400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:100324600-100324800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:100324600-100325200	Strong transcription	Fetal Muscle Leg	muscle
43	chr9:100324600-100326000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:100324600-100326400	Enhancers	Brain Angular Gyrus	brain
45	chr9:100324600-100326400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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