Variant report

Variant	rs7047577
Chromosome Location	chr9:100320916-100320917
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100319150..100321068-chr9:100324699..100328167,3	K562	blood:
2	chr9:100318639..100320970-chr9:100327548..100329985,2	MCF-7	breast:
3	chr9:100308458..100310690-chr9:100319557..100321778,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10759781	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1475545	0.90[EUR][1000 genomes]
rs36035236	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7865885	0.91[EUR][1000 genomes]
rs7869116	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7872629	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs867585	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100306800-100321000	Weak transcription	HSMMtube	muscle
2	chr9:100311800-100325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:100315600-100326200	Weak transcription	Esophagus	oesophagus
4	chr9:100316000-100322400	Enhancers	Right Atrium	heart
5	chr9:100316400-100322400	Enhancers	Left Ventricle	heart
6	chr9:100316600-100322400	Enhancers	Ovary	ovary
7	chr9:100317200-100321400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr9:100317200-100322000	Enhancers	Fetal Brain Male	brain
9	chr9:100317600-100321000	Enhancers	Brain Hippocampus Middle	brain
10	chr9:100317600-100321600	Enhancers	Brain Cingulate Gyrus	brain
11	chr9:100317800-100321200	Weak transcription	K562	blood
12	chr9:100318000-100321000	Enhancers	Brain Angular Gyrus	brain
13	chr9:100318000-100321800	Enhancers	Fetal Heart	heart
14	chr9:100318200-100321800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:100318200-100322400	Enhancers	Right Ventricle	heart
16	chr9:100318400-100321000	Enhancers	Liver	Liver
17	chr9:100318600-100321400	Enhancers	Psoas Muscle	Psoas
18	chr9:100318800-100323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:100319000-100321400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:100319200-100327400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr9:100319400-100321600	Enhancers	Rectal Smooth Muscle	rectum
22	chr9:100319400-100321800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:100319600-100321800	Enhancers	Primary hematopoietic stem cells	blood
24	chr9:100319600-100321800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr9:100319600-100321800	Enhancers	Colon Smooth Muscle	Colon
26	chr9:100320000-100321400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:100320000-100322800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:100320000-100323200	Weak transcription	Brain Substantia Nigra	brain
29	chr9:100320000-100323800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:100320000-100326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:100320000-100326200	Weak transcription	Pancreas	Pancrea
32	chr9:100320000-100326200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:100320000-100326600	Weak transcription	Gastric	stomach
34	chr9:100320400-100321000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr9:100320400-100321000	Enhancers	GM12878-XiMat	blood
36	chr9:100320400-100321400	Enhancers	Adipose Nuclei	Adipose
37	chr9:100320400-100321800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:100320400-100322400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr9:100320400-100324600	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:100320400-100326400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr9:100320600-100321000	Weak transcription	Fetal Brain Female	brain
42	chr9:100320600-100321000	Weak transcription	Spleen	Spleen
43	chr9:100320600-100321600	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr9:100320600-100321800	Enhancers	Brain Anterior Caudate	brain
45	chr9:100320600-100326000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:100320800-100321400	Enhancers	Lung	lung
47	chr9:100320800-100321600	Genic enhancers	Stomach Smooth Muscle	stomach
48	chr9:100320800-100325600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links