Variant report

Variant	rs867585
Chromosome Location	chr9:100318275-100318276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10759781	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs10817760	0.86[ASN][1000 genomes]
rs10817771	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1475545	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36035236	0.93[EUR][1000 genomes]
rs7047577	0.91[EUR][1000 genomes]
rs7865885	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7869116	0.92[EUR][1000 genomes]
rs7872629	0.91[EUR][1000 genomes]
rs7875496	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs867585	FBP1	cis	cerebellum	SCAN
rs867585	C9orf130	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100274000-100318400	Weak transcription	Gastric	stomach
2	chr9:100284600-100318400	Weak transcription	Liver	Liver
3	chr9:100294600-100318400	Weak transcription	Spleen	Spleen
4	chr9:100306800-100321000	Weak transcription	HSMMtube	muscle
5	chr9:100308200-100319400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:100308200-100319600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:100308600-100318600	Weak transcription	Psoas Muscle	Psoas
8	chr9:100310000-100318400	Weak transcription	Brain Substantia Nigra	brain
9	chr9:100310000-100319400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:100311600-100319400	Weak transcription	GM12878-XiMat	blood
11	chr9:100311800-100325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:100315600-100318800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:100315600-100326200	Weak transcription	Esophagus	oesophagus
14	chr9:100315800-100318800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:100315800-100319000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:100316000-100322400	Enhancers	Right Atrium	heart
17	chr9:100316400-100322400	Enhancers	Left Ventricle	heart
18	chr9:100316600-100319200	Weak transcription	Lung	lung
19	chr9:100316600-100322400	Enhancers	Ovary	ovary
20	chr9:100317000-100320000	Enhancers	Pancreas	Pancrea
21	chr9:100317000-100320200	Enhancers	Aorta	Aorta
22	chr9:100317200-100321400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:100317200-100322000	Enhancers	Fetal Brain Male	brain
24	chr9:100317600-100319800	Enhancers	Brain Anterior Caudate	brain
25	chr9:100317600-100321000	Enhancers	Brain Hippocampus Middle	brain
26	chr9:100317600-100321600	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:100317800-100318400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:100317800-100319000	Weak transcription	Adipose Nuclei	Adipose
29	chr9:100317800-100319000	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:100317800-100319600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:100317800-100321200	Weak transcription	K562	blood
32	chr9:100318000-100318800	Weak transcription	Fetal Brain Female	brain
33	chr9:100318000-100321000	Enhancers	Brain Angular Gyrus	brain
34	chr9:100318000-100321800	Enhancers	Fetal Heart	heart
35	chr9:100318200-100318800	Weak transcription	Brain Germinal Matrix	brain
36	chr9:100318200-100319000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr9:100318200-100319400	Genic enhancers	Stomach Smooth Muscle	stomach
38	chr9:100318200-100320200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:100318200-100321800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:100318200-100322400	Enhancers	Right Ventricle	heart

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