Variant report

Variant	rs2776036
Chromosome Location	chr21:16315838-16315839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2179000	0.82[ASN][1000 genomes]
rs2245317	0.81[ASN][1000 genomes]
rs2245411	0.81[ASN][1000 genomes]
rs2256417	0.82[ASN][1000 genomes]
rs2736083	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060151	chr21:16295713-16435497	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv544378	chr21:16295713-16435497	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16313200-16334800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16314400-16318800	Enhancers	HepG2	liver
3	chr21:16314600-16316400	Enhancers	Osteobl	bone
4	chr21:16314600-16317600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr21:16314800-16316000	Enhancers	NHLF	lung
6	chr21:16314800-16318200	Enhancers	Liver	Liver
7	chr21:16315000-16316800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr21:16315000-16316800	Enhancers	Fetal Kidney	kidney
9	chr21:16315200-16316000	Enhancers	Brain Substantia Nigra	brain
10	chr21:16315200-16316200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:16315400-16316200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr21:16315400-16316600	Enhancers	Fetal Lung	lung
13	chr21:16315600-16316400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr21:16315600-16338000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr21:16315800-16316200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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