Variant report

Variant	rs2256417
Chromosome Location	chr21:16295354-16295355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1002460	0.80[EUR][1000 genomes]
rs2142457	0.88[EUR][1000 genomes]
rs2179000	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245317	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2245411	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2403841	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2736080	0.90[EUR][1000 genomes]
rs2739525	0.92[EUR][1000 genomes]
rs2776036	0.82[ASN][1000 genomes]
rs2822971	0.81[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2822981	0.96[CEU][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs9653708	0.81[EUR][1000 genomes]
rs966529	0.91[EUR][1000 genomes]
rs9982221	0.82[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16291200-16295600	Weak transcription	Adipose Nuclei	Adipose
2	chr21:16294200-16296400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr21:16294400-16296000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr21:16294800-16296000	Enhancers	HSMM	muscle
5	chr21:16294800-16296200	Enhancers	NHLF	lung
6	chr21:16295000-16295800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr21:16295000-16296600	Enhancers	NHDF-Ad	bronchial
8	chr21:16295200-16296000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr21:16295200-16296600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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