Variant report

Variant	rs2822981
Chromosome Location	chr21:16288177-16288178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16281712..16283763-chr21:16286381..16288209,2	K562	blood:
2	chr21:16285914..16288225-chr21:16293703..16296131,2	MCF-7	breast:
3	chr21:16283520..16285722-chr21:16286708..16288374,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF127577.1-4	chr21:16287412-16292184	NONHSAT081189

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1002460	0.81[EUR][1000 genomes]
rs2142457	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2179000	0.90[EUR][1000 genomes]
rs2245317	0.90[EUR][1000 genomes]
rs2245411	0.90[EUR][1000 genomes]
rs2256417	0.90[EUR][1000 genomes]
rs2403841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2736080	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2736083	0.84[ASN][1000 genomes]
rs2739525	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2739526	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2822971	0.85[CEU][hapmap]
rs7276494	0.86[ASN][1000 genomes]
rs7279246	0.82[EUR][1000 genomes]
rs8134307	0.84[EUR][1000 genomes]
rs8134602	0.84[EUR][1000 genomes]
rs9653708	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs966529	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9982221	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9983796	0.82[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16274000-16289000	Weak transcription	HSMMtube	muscle
2	chr21:16284800-16289200	Weak transcription	Esophagus	oesophagus
3	chr21:16285000-16288400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr21:16285000-16288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr21:16285000-16289200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr21:16286200-16288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr21:16286400-16289000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr21:16287400-16288800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr21:16287400-16290400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr21:16287400-16290400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr21:16287400-16290600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr21:16287600-16289000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr21:16287600-16290000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr21:16287600-16290400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr21:16287600-16291200	Enhancers	Placenta	Placenta
16	chr21:16287600-16291200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr21:16287800-16288200	Enhancers	Aorta	Aorta
18	chr21:16287800-16289400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr21:16288000-16290000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr21:16288000-16290000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr21:16288000-16290200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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