Variant report

Variant	rs2779193
Chromosome Location	chr17:15846535-15846536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15842295..15844901-chr17:15846137..15847870,2	MCF-7	breast:
2	chr17:15845973..15849997-chr17:15902965..15906205,4	K562	blood:

Variant related genes	Relation type
ENSG00000214941	Chromatin interaction
ENSG00000011295	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2041457	0.83[AMR][1000 genomes]
rs2041458	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2058366	1.00[ASN][1000 genomes]
rs2535602	1.00[ASN][1000 genomes]
rs2535603	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2535604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2535607	0.92[ASN][1000 genomes]
rs2535608	0.92[ASN][1000 genomes]
rs2535610	0.92[ASN][1000 genomes]
rs2779190	1.00[ASN][1000 genomes]
rs2779191	1.00[ASN][1000 genomes]
rs2779192	1.00[ASN][1000 genomes]
rs2779194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2779195	1.00[ASN][1000 genomes]
rs2779196	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2779197	1.00[ASN][1000 genomes]
rs2779199	0.92[ASN][1000 genomes]
rs2779203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57380082	1.00[EUR][1000 genomes]
rs59251882	1.00[EUR][1000 genomes]
rs61197463	1.00[EUR][1000 genomes]
rs7213464	1.00[ASN][1000 genomes]
rs757623	1.00[ASN][1000 genomes]
rs758854	1.00[ASN][1000 genomes]
rs758855	1.00[ASN][1000 genomes]
rs758856	1.00[ASN][1000 genomes]
rs758858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
8	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
12	nsv1061987	chr17:15810017-15855135	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv907707	chr17:15846535-15950751	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15844200-15847600	Weak transcription	Right Atrium	heart
2	chr17:15844800-15846800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr17:15845200-15846600	Enhancers	Placenta	Placenta
4	chr17:15845400-15847200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr17:15845800-15846600	Enhancers	Primary B cells from cord blood	blood
6	chr17:15845800-15847000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:15845800-15847600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr17:15846000-15847200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:15846000-15848000	Enhancers	Lung	lung
10	chr17:15846200-15847200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr17:15846200-15847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr17:15846200-15847600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr17:15846200-15847600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr17:15846200-15847600	Weak transcription	NH-A	brain
15	chr17:15846200-15847800	Weak transcription	HMEC	breast
16	chr17:15846400-15847200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr17:15846400-15847400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:15846400-15847400	Weak transcription	NHEK	skin
19	chr17:15846400-15847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr17:15846400-15847600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:15846400-15847600	Weak transcription	Spleen	Spleen
22	chr17:15846400-15847800	Weak transcription	HUVEC	blood vessel
23	chr17:15846400-15850000	Weak transcription	Hela-S3	cervix

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