Variant report

Variant	rs2783127
Chromosome Location	chr13:80165716-80165717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1208049	0.80[ASN][1000 genomes]
rs1212082	0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs1335368	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1335370	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1408049	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1414155	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1414156	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1475797	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs1577416	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs1577418	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1853830	0.90[MEX][hapmap]
rs2065743	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181433	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2476172	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2476173	0.80[ASN][1000 genomes]
rs2484343	0.80[ASN][1000 genomes]
rs2484344	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2760101	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2760102	0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs2760103	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2760105	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs2760106	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2763810	0.85[MEX][hapmap]
rs2783119	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs2783120	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2783121	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2783122	0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2783125	0.92[ASN][1000 genomes]
rs2783126	0.92[ASN][1000 genomes]
rs2876740	0.85[MEX][hapmap]
rs4145207	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4476060	0.82[EUR][1000 genomes]
rs4885636	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6563113	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs6563115	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs700396	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73235963	0.80[ASN][1000 genomes]
rs7328494	0.80[JPT][hapmap]
rs7338530	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7339303	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs7990250	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7990344	0.87[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7996493	0.85[EUR][1000 genomes]
rs8002042	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs912639	0.85[MEX][hapmap]
rs9545142	0.92[ASN][1000 genomes]
rs9565510	0.88[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9574429	0.81[EUR][1000 genomes]
rs9574434	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9601240	0.80[ASN][1000 genomes]
rs9601242	0.80[ASN][1000 genomes]
rs987284	0.88[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80164200-80167400	Weak transcription	HSMM	muscle
2	chr13:80164400-80167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:80164400-80167400	Weak transcription	HSMMtube	muscle
4	chr13:80164600-80167200	Weak transcription	Osteobl	bone
5	chr13:80164600-80167800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:80164600-80169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:80164800-80165800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:80164800-80165800	Enhancers	NHEK	skin
9	chr13:80164800-80167200	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:80165000-80165800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:80165000-80166000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:80165000-80166200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:80165000-80166200	Enhancers	HMEC	breast
14	chr13:80165200-80165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:80165400-80166800	Weak transcription	Adipose Nuclei	Adipose
16	chr13:80165600-80165800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links