Variant report

Variant	rs7328494
Chromosome Location	chr13:79988808-79988809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:79987904..79990841-chr13:79991131..79993654,2	K562	blood:
2	chr13:79982898..79986328-chr13:79987860..79991468,4	K562	blood:
3	chr13:79979430..79983158-chr13:79988295..79990891,3	MCF-7	breast:
4	chr13:79988180..79990725-chr13:79998257..80000787,2	MCF-7	breast:
5	chr13:79988351..79993028-chr13:79994530..79998422,6	K562	blood:

Variant related genes	Relation type
ENSG00000139746	Chromatin interaction
ENSG00000227354	Chromatin interaction

Extended variants
information (count: 184 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1022891	0.80[JPT][hapmap]
rs11620233	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1212082	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs12865187	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12871015	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12877507	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1324868	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1335368	0.94[JPT][hapmap]
rs1335370	0.93[JPT][hapmap]
rs1408049	0.93[JPT][hapmap]
rs1408658	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs1409018	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs1410336	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs1475797	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1577416	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1577418	0.93[JPT][hapmap]
rs1590465	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1616547	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1619669	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1624537	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1748761	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1748762	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1748763	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1748768	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs1748769	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1749982	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1752648	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs1752649	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs1853830	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1886494	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1980764	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2025913	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs2031815	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057573	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs2095477	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147568	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182009	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2182010	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2182873	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs2265377	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265381	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2265382	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274555	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2296287	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2477395	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2477397	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484345	0.96[ASN][1000 genomes]
rs2760102	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs2760105	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs2760106	0.93[JPT][hapmap]
rs2763809	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2763810	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2765078	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2783119	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs2783121	0.93[JPT][hapmap]
rs2783122	0.93[JPT][hapmap]
rs2876740	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs314689	0.87[ASN][1000 genomes]
rs314690	0.89[ASN][1000 genomes]
rs314692	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs314693	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs314694	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs314695	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3187338	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs35476664	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3742117	0.88[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap]
rs3742118	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap]
rs3742119	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3742120	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3742122	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3752994	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs3764150	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3818563	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs3903388	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4146473	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs416660	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs418150	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4605023	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4885634	0.85[JPT][hapmap]
rs4885636	0.94[JPT][hapmap]
rs57821487	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586219	0.96[ASN][1000 genomes]
rs643778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6563098	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs6563100	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6563104	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6563113	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs7317343	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap]
rs7317416	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs7319252	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7319320	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs7321186	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7322167	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs7322673	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs7322901	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7323246	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7327386	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7327603	0.88[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs7329331	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7330479	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7331525	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7331766	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7331867	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7331872	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7332367	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7332913	0.88[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs7336186	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336581	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336939	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336979	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7338530	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs7338678	0.95[ASN][1000 genomes]
rs7339303	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs7981067	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs7981500	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7986306	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7987193	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7987769	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7988784	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7990321	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7990344	0.92[JPT][hapmap]
rs7996652	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs7998837	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs8001281	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8001308	0.91[ASN][1000 genomes]
rs8001392	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8001622	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8001795	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8002042	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs8002838	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912639	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318621	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs9318623	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9318625	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs9318626	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9318627	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9318634	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9318638	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318640	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318641	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530895	0.92[YRI][hapmap]
rs9530899	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap]
rs9530901	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs9530913	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9530914	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs9530915	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9530917	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530920	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545065	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs9545066	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs9545067	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9545076	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs9545083	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs9545085	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs9545086	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9545087	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9545097	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs9545101	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs9545104	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545106	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545108	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545109	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545113	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545114	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9565486	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9565489	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs9565496	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9565497	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9565500	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9565510	0.93[JPT][hapmap]
rs9574409	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9574416	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9574418	0.93[ASN][1000 genomes]
rs9574419	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9574420	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9574422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9574434	0.93[JPT][hapmap]
rs9593396	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9601226	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9601227	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs987284	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7328494	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79980800-80007200	Weak transcription	Spleen	Spleen
2	chr13:79981000-79989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:79981000-79991200	Weak transcription	Pancreas	Pancrea
4	chr13:79981000-79997400	Weak transcription	Lung	lung
5	chr13:79981000-79997600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:79981000-79998000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:79981000-79998000	Weak transcription	Ovary	ovary
8	chr13:79981000-80007200	Weak transcription	Aorta	Aorta
9	chr13:79981200-79991000	Weak transcription	Placenta	Placenta
10	chr13:79981200-79995800	Weak transcription	HSMMtube	muscle
11	chr13:79981200-79997600	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
13	chr13:79981400-79989400	Weak transcription	Brain Substantia Nigra	brain
14	chr13:79981400-79997800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr13:79981400-80000200	Weak transcription	Psoas Muscle	Psoas
16	chr13:79981600-79989400	Weak transcription	Fetal Brain Male	brain
17	chr13:79981600-79989600	Weak transcription	Fetal Brain Female	brain
18	chr13:79981600-79990400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:79981600-79990800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:79981600-79992000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:79981600-79992200	Weak transcription	HSMM	muscle
22	chr13:79981600-79993600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:79981600-79993600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:79981600-79993600	Weak transcription	Adipose Nuclei	Adipose
25	chr13:79981600-79993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr13:79981600-79993800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr13:79981600-79996800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr13:79981600-79997600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr13:79981600-79997600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr13:79981600-79998000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr13:79981600-79998200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr13:79981600-79998200	Weak transcription	Brain Hippocampus Middle	brain
33	chr13:79981800-79993600	Weak transcription	Primary B cells from cord blood	blood
34	chr13:79981800-80001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:79982000-79989200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr13:79982000-79991000	Weak transcription	Brain Germinal Matrix	brain
37	chr13:79982000-79992800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:79982000-79997200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:79982200-79990600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr13:79982200-79990800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr13:79982200-79991200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:79982200-79997600	Weak transcription	NHEK	skin
43	chr13:79982200-79998000	Weak transcription	Brain Anterior Caudate	brain
44	chr13:79982400-79997600	Weak transcription	Fetal Lung	lung
45	chr13:79982600-79989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr13:79982600-79991200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr13:79982600-79992000	Weak transcription	HMEC	breast
48	chr13:79982600-80006400	Weak transcription	Gastric	stomach
49	chr13:79982800-79990800	Weak transcription	K562	blood
50	chr13:79982800-79997600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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