Variant report

Variant	rs9565497
Chromosome Location	chr13:79980465-79980466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:397)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:397 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF4	chr13:79980053-79980732	GM12878	blood:	n/a	n/a
2	YY1	chr13:79979786-79980924	GM12891	blood:	n/a	chr13:79980352-79980372
3	TAL1	chr13:79980194-79981211	K562	blood:	n/a	n/a
4	PML	chr13:79978947-79981124	GM12878	blood:	n/a	n/a
5	BCLAF1	chr13:79979128-79980953	GM12878	blood:	n/a	n/a
6	MAX	chr13:79979911-79980867	HepG2	liver:	n/a	n/a
7	POLR2A	chr13:79979701-79980964	HCT-116	colon:	n/a	n/a
8	POLR2A	chr13:79980230-79980515	HepG2	liver:	n/a	n/a
9	POLR2A	chr13:79979774-79980839	ProgFib	skin:	n/a	n/a
10	ZBTB33	chr13:79980128-79980548	K562	blood:	n/a	chr13:79980373-79980388
11	PML	chr13:79980208-79980923	GM12878	blood:	n/a	n/a
12	ATF2	chr13:79980051-79980837	GM12878	blood:	n/a	n/a
13	POLR2A	chr13:79979710-79980873	GM10847	blood:	n/a	n/a
14	TAF1	chr13:79979673-79980925	ECC-1	luminal epithelium:	n/a	n/a
15	YY1	chr13:79979704-79980753	HepG2	liver:	n/a	chr13:79980352-79980372
16	POLR2A	chr13:79980016-79980881	HepG2	liver:	n/a	n/a
17	POLR2A	chr13:79979203-79981108	HL-60	blood:	n/a	n/a
18	POLR2A	chr13:79979807-79980907	A549	lung:	n/a	n/a
19	NRF1	chr13:79980269-79980639	GM12878	blood:	n/a	n/a
20	SIN3AK20	chr13:79980007-79981009	SK-N-SH	brain:	n/a	n/a
21	ZBTB33	chr13:79979940-79980841	HCT-116	colon:	n/a	chr13:79980373-79980388
22	TAF1	chr13:79979690-79980993	GM12878	blood:	n/a	n/a
23	YY1	chr13:79980090-79980562	GM12891	blood:	n/a	chr13:79980352-79980372
24	YY1	chr13:79980220-79980546	A549	lung:	n/a	chr13:79980352-79980372
25	HEY1	chr13:79979678-79980918	HepG2	liver:	n/a	n/a
26	IRF1	chr13:79980102-79980897	K562	blood:	n/a	n/a
27	ZBTB33	chr13:79980085-79980836	HepG2	liver:	n/a	chr13:79980373-79980388
28	MAZ	chr13:79979356-79980973	K562	blood:	n/a	n/a
29	TAF1	chr13:79979950-79980864	GM12891	blood:	n/a	n/a
30	POLR2A	chr13:79979198-79981065	GM18505	blood:	n/a	n/a
31	MYC	chr13:79980305-79980898	HUVEC	blood vessel:	n/a	n/a
32	MXI1	chr13:79979853-79981293	GM12878	blood:	n/a	n/a
33	SMC3	chr13:79980289-79981020	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr13:79979102-79981045	GM12891	blood:	n/a	n/a
35	FOS	chr13:79980331-79980863	MCF10A-Er-Src	breast:	n/a	n/a
36	MAX	chr13:79979771-79981007	ECC-1	luminal epithelium:	n/a	n/a
37	E2F6	chr13:79980144-79981024	H1-hESC	embryonic stem cell:	n/a	chr13:79980376-79980391
38	MAX	chr13:79979302-79980867	K562	blood:	n/a	n/a
39	POLR2A	chr13:79978999-79980991	GM18951	blood:	n/a	n/a
40	ZBTB7A	chr13:79980026-79980597	ECC-1	luminal epithelium:	n/a	n/a
41	POLR2A	chr13:79979713-79980793	MCF-7	breast:	n/a	n/a
42	HA-E2F1	chr13:79979688-79981007	MCF-7	breast:	n/a	n/a
43	POLR2A	chr13:79979187-79981051	HepG2	liver:	n/a	n/a
44	POLR2A	chr13:79979733-79980931	K562	blood:	n/a	n/a
45	POLR2A	chr13:79979195-79981340	GM12878	blood:	n/a	n/a
46	TEAD4	chr13:79980264-79980685	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr13:79979031-79981704	HepG2	liver:	n/a	n/a
48	MAFK	chr13:79980142-79980892	Hela-S3	cervix:	n/a	n/a
49	SIX5	chr13:79980231-79980805	A549	lung:	n/a	n/a
50	MYC	chr13:79979202-79981041	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:101361471..101362344-chr13:79980282..79980950,2	Hela-S3	cervix:
2	chr13:79980107..79980784-chr9:135545633..135546196,2	HCT-116	colon:
3	chr10:17685891..17686543-chr13:79979950..79980498,2	NB4	blood:
4	chr13:79980450..79981962-chr13:80054323..80056011,2	K562	blood:
5	chr13:79980160..79980671-chr20:33104051..33104628,2	Hela-S3	cervix:
6	chr13:79962105..79964858-chr13:79978684..79980490,2	K562	blood:
7	chr13:79979196..79982246-chr13:80054691..80057070,3	MCF-7	breast:
8	chr13:79980137..79980750-chr20:5591274..5591927,2	NB4	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDFIP2-2	chr13:79980444-79980612	XLOC_010445
2	lnc-NDFIP2-2	chr13:79980444-79980612	XLOC_010445
3	lnc-NDFIP2-2	chr13:79980444-79980612	NONHSAT034478
4	lnc-NDFIP2-2	chr13:79980452-79980612	NONHSAT034479
5	lnc-NDFIP2-2	chr13:79980452-79980612	ENSG00000227354.2

No data

Variant related genes	Relation type
RBM26	TF binding region
RBM26-AS1	TF binding region
ENSG00000162694	Chromatin interaction
ENSG00000125971	Chromatin interaction
ENSG00000136738	Chromatin interaction
ENSG00000252496	Chromatin interaction
ENSG00000232132	Chromatin interaction
ENSG00000125772	Chromatin interaction
ENSG00000102471	Chromatin interaction
ENSG00000125485	Chromatin interaction
ENSG00000162695	Chromatin interaction

Extended variants
information (count: 184 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs1022891	0.82[JPT][hapmap]
rs11620233	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1212082	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs12865187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12871015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12877507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324868	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335368	0.88[JPT][hapmap]
rs1335370	0.88[JPT][hapmap]
rs1408049	0.88[JPT][hapmap]
rs1408658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1409018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1410336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1475797	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1577416	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1577418	0.88[JPT][hapmap]
rs1590465	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1616547	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1619669	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1624537	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1627031	0.88[AFR][1000 genomes]
rs1748761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1748762	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1748763	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1748768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1748769	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1749982	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1752648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1752649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1853830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886494	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1980764	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2031815	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2095477	0.94[ASN][1000 genomes]
rs2147568	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2182873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2265377	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2265378	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2265381	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265382	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2296287	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2477395	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2477397	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484345	0.97[ASN][1000 genomes]
rs2760102	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2760105	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2760106	0.88[JPT][hapmap]
rs2763809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2763810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765078	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2783119	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2783121	0.88[JPT][hapmap]
rs2783122	0.88[JPT][hapmap]
rs2876740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs314689	0.89[ASN][1000 genomes]
rs314690	0.90[ASN][1000 genomes]
rs314692	0.97[ASN][1000 genomes]
rs314693	0.97[ASN][1000 genomes]
rs314694	0.97[ASN][1000 genomes]
rs314695	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3187338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs35476664	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3742117	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs3742118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3742119	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3742120	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3742122	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3752994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3764150	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3818563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3903388	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4146473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs416660	0.97[ASN][1000 genomes]
rs418150	0.97[ASN][1000 genomes]
rs4605023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4885636	0.88[JPT][hapmap]
rs57821487	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs586219	0.97[ASN][1000 genomes]
rs643778	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6563100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6563104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6563113	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7317343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7317416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7319252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7319320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7321186	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7322167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7322673	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7322901	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7323246	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7327386	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7327603	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7328494	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7329331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7330479	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7331525	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7331766	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7331867	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7331872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7332367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7332913	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7336186	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7336581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7336939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7336979	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7338530	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7338678	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7339303	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7981067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7981500	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7986306	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7987193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7987769	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7988784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7990321	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7990344	0.86[JPT][hapmap]
rs7996652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7998837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs8001281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8001308	0.90[ASN][1000 genomes]
rs8001392	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8001622	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8001795	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8002042	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs8002838	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs912639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318626	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318627	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318634	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318638	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9530901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9530913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530914	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9530915	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530917	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530920	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs9545067	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545086	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545087	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545097	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9545101	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9545104	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545106	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545108	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545109	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545113	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545114	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9565489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9565496	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565500	0.95[ASN][1000 genomes]
rs9565510	0.88[JPT][hapmap]
rs9574409	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9574416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9574418	0.95[ASN][1000 genomes]
rs9574419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9574420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9574422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9574434	0.88[JPT][hapmap]
rs9593396	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9601226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9601227	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs987284	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3336073	chr13:79979151-79981199	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9565497	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79976200-79981600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:79976600-79981600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:79977000-79981400	Active TSS	GM12878-XiMat	blood
4	chr13:79977400-79980800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr13:79977400-79981400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr13:79977800-79981200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:79977800-79981200	Active TSS	Fetal Intestine Small	intestine
8	chr13:79978000-79981000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr13:79978000-79981400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:79978000-79981600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:79978000-79981600	Active TSS	Colonic Mucosa	Colon
12	chr13:79978200-79981600	Active TSS	A549	lung
13	chr13:79978400-79981000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:79978400-79981200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:79978400-79981200	Active TSS	Right Ventricle	heart
16	chr13:79978400-79981600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:79978400-79981600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:79978600-79980800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:79978600-79981000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:79978600-79981000	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr13:79978600-79981000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:79978600-79981000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr13:79978600-79981000	Active TSS	Fetal Intestine Large	intestine
24	chr13:79978600-79981000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr13:79978600-79981000	Active TSS	Hela-S3	cervix
26	chr13:79978600-79981200	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr13:79978600-79981200	Active TSS	Fetal Muscle Trunk	muscle
28	chr13:79978600-79981400	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr13:79978600-79981400	Active TSS	NHLF	lung
30	chr13:79978800-79980600	Active TSS	Pancreas	Pancrea
31	chr13:79978800-79980800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr13:79978800-79980800	Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr13:79978800-79980800	Active TSS	NH-A	brain
34	chr13:79978800-79980800	Active TSS	NHDF-Ad	bronchial
35	chr13:79978800-79981000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr13:79978800-79981000	Active TSS	Aorta	Aorta
37	chr13:79978800-79981000	Active TSS	Colon Smooth Muscle	Colon
38	chr13:79978800-79981000	Active TSS	Fetal Brain Female	brain
39	chr13:79978800-79981000	Active TSS	Fetal Kidney	kidney
40	chr13:79978800-79981000	Active TSS	Gastric	stomach
41	chr13:79978800-79981000	Active TSS	Left Ventricle	heart
42	chr13:79978800-79981000	Active TSS	Ovary	ovary
43	chr13:79978800-79981000	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr13:79978800-79981000	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr13:79978800-79981200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr13:79978800-79981200	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr13:79978800-79981200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:79978800-79981200	Active TSS	Brain Germinal Matrix	brain
49	chr13:79978800-79981200	Active TSS	Fetal Muscle Leg	muscle
50	chr13:79978800-79981400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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Variant report

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