Variant report

Variant	rs1022891
Chromosome Location	chr13:79957817-79957818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79955549..79959842-chr13:79960157..79964525,5	K562	blood:

Variant related genes	Relation type
ENSG00000252496	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs12865187	0.88[JPT][hapmap]
rs12871015	0.88[JPT][hapmap]
rs12877507	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs1324868	0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1408049	0.81[MEX][hapmap]
rs1408658	0.88[JPT][hapmap]
rs1409018	0.88[JPT][hapmap]
rs1410336	0.88[JPT][hapmap]
rs1590465	0.80[ASN][1000 genomes]
rs1619669	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1748761	0.82[JPT][hapmap]
rs1748768	0.93[JPT][hapmap]
rs1749982	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1752648	0.88[JPT][hapmap]
rs1752649	0.88[JPT][hapmap]
rs1853830	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs1886494	0.80[ASN][1000 genomes]
rs1980764	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2025913	0.88[JPT][hapmap]
rs2031815	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2057573	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs2182009	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs2182010	0.88[JPT][hapmap]
rs2182873	0.88[JPT][hapmap]
rs2265378	0.88[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap]
rs2274555	0.88[JPT][hapmap]
rs2760106	0.81[MEX][hapmap]
rs2763809	0.82[JPT][hapmap]
rs2763810	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs2876740	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs3187338	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs35476664	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3742117	0.88[JPT][hapmap]
rs3742118	0.88[JPT][hapmap]
rs3742119	0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs3742120	0.82[ASN][1000 genomes]
rs3742122	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs3752994	0.88[JPT][hapmap]
rs3764150	0.82[AMR][1000 genomes]
rs3818563	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs3903388	0.88[JPT][hapmap]
rs4146473	0.88[JPT][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes]
rs4605023	0.80[ASN][1000 genomes]
rs57821487	0.81[ASN][1000 genomes]
rs643778	0.88[CHD][hapmap];0.82[JPT][hapmap]
rs6563098	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs6563100	0.88[JPT][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6563104	0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7317343	0.88[JPT][hapmap]
rs7317416	0.88[JPT][hapmap]
rs7319252	0.88[JPT][hapmap]
rs7319320	0.88[JPT][hapmap]
rs7321186	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7322167	0.88[JPT][hapmap]
rs7322673	0.88[JPT][hapmap]
rs7322901	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7323246	0.81[ASN][1000 genomes]
rs7327386	0.88[JPT][hapmap]
rs7327603	0.88[JPT][hapmap]
rs7328494	0.80[JPT][hapmap]
rs7329331	0.88[JPT][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7330479	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7331766	0.81[ASN][1000 genomes]
rs7331872	0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7332367	0.88[JPT][hapmap];0.85[MEX][hapmap]
rs7332913	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs7336186	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7336581	0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7981067	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs7981500	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7987193	0.82[JPT][hapmap]
rs7987769	0.88[JPT][hapmap]
rs7988784	0.88[JPT][hapmap]
rs7996652	0.88[JPT][hapmap]
rs7998837	0.88[JPT][hapmap]
rs8001281	0.82[JPT][hapmap]
rs8001392	0.84[AMR][1000 genomes]
rs912639	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs9318621	0.88[JPT][hapmap]
rs9318623	0.94[JPT][hapmap]
rs9318625	0.88[JPT][hapmap]
rs9318626	0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs9318627	0.88[CHD][hapmap];0.88[JPT][hapmap]
rs9318634	0.88[JPT][hapmap]
rs9318640	0.81[JPT][hapmap]
rs9318641	0.81[JPT][hapmap]
rs9530899	0.87[JPT][hapmap]
rs9530901	0.88[JPT][hapmap];0.86[MEX][hapmap]
rs9530913	0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9530914	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9530915	0.80[ASN][1000 genomes]
rs9545065	0.88[JPT][hapmap]
rs9545066	0.92[JPT][hapmap]
rs9545067	0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs9545076	0.88[JPT][hapmap];0.85[MEX][hapmap]
rs9545083	0.88[JPT][hapmap]
rs9545085	0.88[JPT][hapmap]
rs9545086	0.88[JPT][hapmap]
rs9545087	0.88[JPT][hapmap]
rs9545097	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9545101	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9545104	0.81[ASN][1000 genomes]
rs9545106	0.81[ASN][1000 genomes]
rs9565486	0.88[JPT][hapmap]
rs9565489	0.88[JPT][hapmap]
rs9565496	0.80[ASN][1000 genomes]
rs9565497	0.82[JPT][hapmap]
rs9574409	0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs9574416	0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9574418	0.82[ASN][1000 genomes]
rs9574419	0.80[ASN][1000 genomes]
rs9574420	0.80[ASN][1000 genomes]
rs9574422	0.82[JPT][hapmap]
rs9593396	0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs9601226	0.80[ASN][1000 genomes]
rs987284	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1022891	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:79946000-79960000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
4	chr13:79951200-79959800	Weak transcription	Fetal Heart	heart
5	chr13:79951200-79962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
7	chr13:79951400-79959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr13:79951400-79960000	Weak transcription	NHDF-Ad	bronchial
9	chr13:79951400-79962200	Weak transcription	Lung	lung
10	chr13:79951600-79960000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:79951600-79960000	Weak transcription	NH-A	brain
12	chr13:79951600-79965400	Weak transcription	Brain Angular Gyrus	brain
13	chr13:79951600-79969000	Weak transcription	Fetal Brain Male	brain
14	chr13:79951800-79960000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:79951800-79961800	Weak transcription	Brain Germinal Matrix	brain
16	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
17	chr13:79952000-79967200	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:79952000-79967600	Weak transcription	Gastric	stomach
19	chr13:79952200-79960000	Weak transcription	Ovary	ovary
20	chr13:79952200-79967600	Weak transcription	Pancreas	Pancrea
21	chr13:79952200-79967600	Weak transcription	Spleen	Spleen
22	chr13:79952400-79958000	Weak transcription	HepG2	liver
23	chr13:79952400-79960000	Weak transcription	NHLF	lung
24	chr13:79952400-79960000	Weak transcription	Osteobl	bone
25	chr13:79952400-79962200	Weak transcription	Psoas Muscle	Psoas
26	chr13:79952400-79963000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr13:79952400-79963600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:79952400-79966800	Weak transcription	Thymus	Thymus
29	chr13:79952400-79967000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:79952400-79967200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:79952400-79967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:79952400-79967200	Weak transcription	Fetal Lung	lung
33	chr13:79952400-79967400	Weak transcription	Fetal Brain Female	brain
34	chr13:79952400-79967600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:79952400-79967600	Weak transcription	Left Ventricle	heart
36	chr13:79952400-79967600	Weak transcription	Right Ventricle	heart
37	chr13:79952400-79967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:79952600-79966800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:79952600-79977800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr13:79952800-79960000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:79952800-79966800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:79952800-79966800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr13:79952800-79967200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr13:79952800-79967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:79952800-79967800	Weak transcription	Fetal Stomach	stomach
46	chr13:79953000-79961400	Weak transcription	Liver	Liver
47	chr13:79953000-79967200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr13:79953000-79967200	Weak transcription	Fetal Muscle Leg	muscle
49	chr13:79953000-79967400	Weak transcription	Placenta	Placenta
50	chr13:79953200-79958000	Weak transcription	Fetal Thymus	thymus

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