Variant report

Variant	rs1324868
Chromosome Location	chr13:79954175-79954176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79949599..79952196-chr13:79952823..79955805,2	MCF-7	breast:

Extended variants
information (count: 184 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs1022891	0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11620233	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1212082	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs12865187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12871015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs12877507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335368	0.82[JPT][hapmap]
rs1335370	0.82[JPT][hapmap]
rs1408049	0.82[JPT][hapmap];0.95[MEX][hapmap]
rs1408656	0.82[TSI][hapmap]
rs1408658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1409018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1410336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1475797	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1577416	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1577418	0.82[JPT][hapmap]
rs1590465	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1616547	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1619669	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1624537	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748762	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748763	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1748769	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1749982	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1752648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1752649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1853830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1886494	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980764	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2031815	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2057573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs2095477	0.91[ASN][1000 genomes]
rs2147568	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2182009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2182873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2265377	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs2265378	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2265381	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265382	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274554	0.83[ASW][hapmap];0.98[LWK][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap]
rs2274555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2296287	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2477395	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2477397	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2484345	0.95[ASN][1000 genomes]
rs2760102	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2760105	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2760106	0.82[JPT][hapmap];0.95[MEX][hapmap]
rs2763809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2763810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2765078	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2783119	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2783121	0.82[JPT][hapmap]
rs2783122	0.82[JPT][hapmap];0.90[MEX][hapmap]
rs2876740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs314689	0.87[ASN][1000 genomes]
rs314690	0.87[ASN][1000 genomes]
rs314692	0.95[ASN][1000 genomes]
rs314693	0.95[ASN][1000 genomes]
rs314694	0.95[ASN][1000 genomes]
rs314695	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3187338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap]
rs35476664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3742117	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3742118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3742119	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3742120	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742122	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3752994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3764150	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3818563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs3903388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4146473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs416660	0.95[ASN][1000 genomes]
rs418150	0.95[ASN][1000 genomes]
rs4605023	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885636	0.82[JPT][hapmap]
rs57821487	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs586219	0.95[ASN][1000 genomes]
rs643778	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6563098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs6563100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563113	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7317343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7317416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7319252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7319320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7321186	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7322167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7322673	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7322901	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7323246	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7327386	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7327603	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7328494	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7329331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7330479	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7331525	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7331766	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7331867	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7331872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332367	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap]
rs7332913	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs7336186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336581	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336939	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7336979	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7338530	0.81[CHB][hapmap]
rs7338678	0.94[ASN][1000 genomes]
rs7339303	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7981067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs7981500	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7986306	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7987193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7987769	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7988784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7990321	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7996652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7998837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8001281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8001308	0.87[ASN][1000 genomes]
rs8001392	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001622	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8001795	0.95[ASN][1000 genomes]
rs8002042	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs8002838	0.95[ASN][1000 genomes]
rs912639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318626	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318634	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap]
rs9318638	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9530901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs9530913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9530914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9530915	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530917	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530920	0.95[ASN][1000 genomes]
rs9545065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545067	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs9545083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545086	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9545101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9545104	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9545106	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9545108	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545109	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545113	0.95[ASN][1000 genomes]
rs9545114	0.95[ASN][1000 genomes]
rs9565486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9565489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9565496	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565500	0.93[ASN][1000 genomes]
rs9565510	0.81[JPT][hapmap]
rs9574409	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9574416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9574418	0.98[ASN][1000 genomes]
rs9574419	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9574420	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9574422	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9574434	0.82[JPT][hapmap]
rs9593396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9601226	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9601227	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs987284	0.82[JPT][hapmap];0.95[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79893200-79957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:79941800-79956600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:79943000-79957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:79946000-79960000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
7	chr13:79946800-79954600	Weak transcription	Colonic Mucosa	Colon
8	chr13:79947800-79954200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:79947800-79954400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr13:79947800-79955600	Strong transcription	Dnd41	blood
11	chr13:79948000-79954400	Strong transcription	Primary B cells from cord blood	blood
12	chr13:79948200-79954400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:79948200-79954600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:79948600-79954400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:79950200-79954200	Strong transcription	K562	blood
16	chr13:79950200-79956200	Strong transcription	Hela-S3	cervix
17	chr13:79951200-79959800	Weak transcription	Fetal Heart	heart
18	chr13:79951200-79962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
20	chr13:79951400-79956600	Weak transcription	Brain Substantia Nigra	brain
21	chr13:79951400-79956600	Weak transcription	Colon Smooth Muscle	Colon
22	chr13:79951400-79956600	Weak transcription	Small Intestine	intestine
23	chr13:79951400-79956600	Weak transcription	HSMMtube	muscle
24	chr13:79951400-79956800	Weak transcription	A549	lung
25	chr13:79951400-79957200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:79951400-79959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:79951400-79960000	Weak transcription	NHDF-Ad	bronchial
28	chr13:79951400-79962200	Weak transcription	Lung	lung
29	chr13:79951600-79955000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr13:79951600-79956800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr13:79951600-79960000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr13:79951600-79960000	Weak transcription	NH-A	brain
33	chr13:79951600-79965400	Weak transcription	Brain Angular Gyrus	brain
34	chr13:79951600-79969000	Weak transcription	Fetal Brain Male	brain
35	chr13:79951800-79956400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr13:79951800-79956600	Weak transcription	NHEK	skin
37	chr13:79951800-79960000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr13:79951800-79961800	Weak transcription	Brain Germinal Matrix	brain
39	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
40	chr13:79952000-79967200	Weak transcription	Brain Hippocampus Middle	brain
41	chr13:79952000-79967600	Weak transcription	Gastric	stomach
42	chr13:79952200-79956800	Weak transcription	Stomach Mucosa	stomach
43	chr13:79952200-79960000	Weak transcription	Ovary	ovary
44	chr13:79952200-79967600	Weak transcription	Pancreas	Pancrea
45	chr13:79952200-79967600	Weak transcription	Spleen	Spleen
46	chr13:79952400-79954800	Weak transcription	Fetal Intestine Large	intestine
47	chr13:79952400-79954800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr13:79952400-79955000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr13:79952400-79955600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr13:79952400-79956000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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