Variant report

Variant	rs9545101
Chromosome Location	chr13:79973941-79973942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79972223..79975037-chr13:79978847..79982091,3	MCF-7	breast:
2	chr13:79966275..79969690-chr13:79971723..79976630,6	K562	blood:

Variant related genes	Relation type
ENSG00000139746	Chromatin interaction
ENSG00000227354	Chromatin interaction

Extended variants
information (count: 191 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs1022891	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11620233	0.87[ASN][1000 genomes]
rs1212082	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs12865187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12871015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12877507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1324868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1335368	0.82[JPT][hapmap]
rs1335370	0.82[JPT][hapmap]
rs1408049	0.82[JPT][hapmap]
rs1408658	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1409018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1410336	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1475797	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1577416	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1577418	0.82[JPT][hapmap]
rs1590465	0.98[ASN][1000 genomes]
rs1616547	0.81[ASN][1000 genomes]
rs1619669	0.95[ASN][1000 genomes]
rs1624537	0.95[ASN][1000 genomes]
rs17071512	1.00[YRI][hapmap]
rs17071545	1.00[YRI][hapmap]
rs1748761	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1748762	0.94[ASN][1000 genomes]
rs1748763	0.94[ASN][1000 genomes]
rs1748768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1748769	0.95[ASN][1000 genomes]
rs1749982	0.95[ASN][1000 genomes]
rs1752648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1752649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1853830	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1886494	0.98[ASN][1000 genomes]
rs1980764	0.94[ASN][1000 genomes]
rs2025913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2031815	0.99[ASN][1000 genomes]
rs2057573	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2095477	0.93[ASN][1000 genomes]
rs2147568	0.95[ASN][1000 genomes]
rs2182009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2182010	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2182873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2265377	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs2265378	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2265381	0.95[ASN][1000 genomes]
rs2265382	0.95[ASN][1000 genomes]
rs2274555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2296287	0.94[ASN][1000 genomes]
rs2477395	0.95[ASN][1000 genomes]
rs2477397	0.95[ASN][1000 genomes]
rs2484345	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2760102	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2760105	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs2760106	0.82[JPT][hapmap]
rs2763809	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2763810	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2765078	0.95[ASN][1000 genomes]
rs2783119	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs2783121	0.82[JPT][hapmap]
rs2783122	0.82[JPT][hapmap]
rs2876740	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs314688	0.86[AMR][1000 genomes]
rs314689	0.85[ASN][1000 genomes]
rs314690	0.89[ASN][1000 genomes]
rs314692	0.96[ASN][1000 genomes]
rs314693	0.96[ASN][1000 genomes]
rs314694	0.96[ASN][1000 genomes]
rs314695	0.95[ASN][1000 genomes]
rs3187338	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35476664	0.94[ASN][1000 genomes]
rs3742117	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3742118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3742119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3742120	1.00[ASN][1000 genomes]
rs3742122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3752994	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3764150	0.92[ASN][1000 genomes]
rs3818563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3903388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4146473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs416660	0.96[ASN][1000 genomes]
rs418150	0.96[ASN][1000 genomes]
rs4605023	0.98[ASN][1000 genomes]
rs4885633	0.82[AMR][1000 genomes]
rs4885634	0.81[AMR][1000 genomes]
rs4885636	0.82[JPT][hapmap]
rs57821487	0.99[ASN][1000 genomes]
rs586219	0.96[ASN][1000 genomes]
rs643778	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6563098	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6563100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6563104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6563110	0.82[AMR][1000 genomes]
rs6563113	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs7317343	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7317416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7319252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7319320	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7321186	0.98[ASN][1000 genomes]
rs7322167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7322673	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7322901	0.98[ASN][1000 genomes]
rs7323246	0.99[ASN][1000 genomes]
rs7325095	0.82[AMR][1000 genomes]
rs7327386	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7327603	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7328494	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7329331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7330479	0.99[ASN][1000 genomes]
rs7331525	0.95[ASN][1000 genomes]
rs7331766	0.99[ASN][1000 genomes]
rs7331867	0.89[ASN][1000 genomes]
rs7331872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7332367	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7332913	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7336186	0.98[ASN][1000 genomes]
rs7336581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7336939	0.89[ASN][1000 genomes]
rs7336979	0.95[ASN][1000 genomes]
rs7338530	0.81[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs7338678	0.92[ASN][1000 genomes]
rs7339303	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7981067	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7981500	0.99[ASN][1000 genomes]
rs7986306	0.92[ASN][1000 genomes]
rs7987193	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7987769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7988601	0.82[AMR][1000 genomes]
rs7988784	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7990321	0.95[ASN][1000 genomes]
rs7996652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7998837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8001281	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs8001308	0.87[ASN][1000 genomes]
rs8001392	0.88[ASN][1000 genomes]
rs8001622	0.95[ASN][1000 genomes]
rs8001795	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8002042	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs8002838	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs912639	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9318621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318623	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318625	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318626	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9318627	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9318634	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9318638	0.95[ASN][1000 genomes]
rs9318640	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9318641	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9530899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9530901	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9530913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9530914	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9530915	0.98[ASN][1000 genomes]
rs9530917	0.95[ASN][1000 genomes]
rs9530920	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9530922	0.82[AMR][1000 genomes]
rs9530925	0.81[AMR][1000 genomes]
rs9545065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545067	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545085	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545086	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545087	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9545097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545104	0.99[ASN][1000 genomes]
rs9545106	0.99[ASN][1000 genomes]
rs9545108	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9545109	0.95[ASN][1000 genomes]
rs9545113	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9545114	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9565486	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9565489	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9565496	0.98[ASN][1000 genomes]
rs9565497	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9565500	0.95[ASN][1000 genomes]
rs9565510	0.81[JPT][hapmap]
rs9574409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9574413	1.00[YRI][hapmap]
rs9574416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9574418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9574419	0.98[ASN][1000 genomes]
rs9574420	0.98[ASN][1000 genomes]
rs9574422	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9574434	0.82[JPT][hapmap]
rs9593396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9601226	0.98[ASN][1000 genomes]
rs9601227	0.95[ASN][1000 genomes]
rs987284	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9545101	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
2	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
3	chr13:79952600-79977800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:79958800-79977800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:79960600-79975600	Weak transcription	Ovary	ovary
6	chr13:79962800-79974400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:79968000-79975200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr13:79968000-79975800	Weak transcription	HMEC	breast
9	chr13:79968000-79976600	Weak transcription	Right Ventricle	heart
10	chr13:79968000-79977800	Weak transcription	Gastric	stomach
11	chr13:79968200-79974400	Weak transcription	Brain Angular Gyrus	brain
12	chr13:79968200-79974600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:79968200-79975600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:79968400-79975800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr13:79968400-79977200	Weak transcription	Right Atrium	heart
16	chr13:79968400-79979200	Weak transcription	Lung	lung
17	chr13:79968600-79975600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr13:79968600-79976600	Weak transcription	Colon Smooth Muscle	Colon
19	chr13:79968600-79977800	Weak transcription	Spleen	Spleen
20	chr13:79968600-79978600	Weak transcription	Placenta	Placenta
21	chr13:79968600-79978600	Weak transcription	Pancreas	Pancrea
22	chr13:79968600-79979200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:79968800-79974600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:79969000-79976000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:79969200-79975400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr13:79969200-79975600	Weak transcription	Psoas Muscle	Psoas
27	chr13:79969200-79975600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr13:79969200-79975800	Strong transcription	Fetal Thymus	thymus
29	chr13:79969200-79977800	Weak transcription	Left Ventricle	heart
30	chr13:79969400-79974400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr13:79969600-79977200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr13:79970000-79974200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr13:79970000-79975000	Strong transcription	HUVEC	blood vessel
34	chr13:79970200-79975200	Weak transcription	Brain Hippocampus Middle	brain
35	chr13:79970200-79976600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr13:79970400-79974000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr13:79970400-79974200	Weak transcription	Hela-S3	cervix
38	chr13:79970400-79974800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr13:79970400-79974800	Strong transcription	A549	lung
40	chr13:79970400-79975600	Weak transcription	Thymus	Thymus
41	chr13:79970400-79977200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr13:79970400-79977800	Weak transcription	HSMMtube	muscle
43	chr13:79970600-79974000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr13:79970800-79975200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr13:79970800-79975600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr13:79971000-79974400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr13:79971000-79976800	Weak transcription	NH-A	brain
48	chr13:79971200-79974800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr13:79971200-79975600	Weak transcription	Fetal Brain Female	brain
50	chr13:79971400-79974600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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