Variant report

Variant	rs12865187
Chromosome Location	chr13:79890604-79890605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF219-3	chr13:79890355-79891631	ENSG00000250925

Extended variants
information (count: 202 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs1007569	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022891	0.88[JPT][hapmap]
rs1028770	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10444623	0.88[ASN][1000 genomes]
rs12871015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12872328	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12875039	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12877507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1324868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1324870	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335368	0.82[JPT][hapmap]
rs1335370	0.82[JPT][hapmap]
rs1408657	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1409018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409019	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1577416	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1577418	0.82[JPT][hapmap]
rs1626333	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1748761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1748767	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1748768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1749983	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1752646	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1752647	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1752648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1752649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1856996	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1856997	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927506	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980883	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2057573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147566	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2182010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2182873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2265377	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2265378	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2274555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2763809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2763810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2765079	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2769552	0.93[ASN][1000 genomes]
rs28579970	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2876739	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2876740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3187338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36152718	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3742117	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3742122	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3752994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4146473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4264284	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4328330	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4351945	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4497554	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4573813	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4884129	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4885625	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4885626	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885627	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885628	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885629	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4885636	0.82[JPT][hapmap]
rs56911077	0.95[ASN][1000 genomes]
rs643778	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6563096	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6563098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6563104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6563113	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7140027	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7317343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7319212	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7319252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7319320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7322167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7322673	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7322744	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322756	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7324006	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7327386	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7327603	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7328494	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7329331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7331872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7332004	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7332367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7332913	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7333904	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7338170	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7338530	0.81[CHB][hapmap]
rs7338677	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7358847	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7981067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7983344	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7987193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7987769	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7988331	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7988784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7995243	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7996652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7998837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8001281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs8002042	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs8002633	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8002648	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs912639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9285309	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9285310	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318624	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9318626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9318627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9318633	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9318634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9318640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs943709	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943710	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs943711	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943712	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530889	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9530891	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530893	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530894	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530895	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530896	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530897	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9530900	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530902	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9530904	0.86[ASN][1000 genomes]
rs9530905	0.86[ASN][1000 genomes]
rs9530906	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9530913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9530914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545047	0.96[ASN][1000 genomes]
rs9545048	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545052	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545053	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545054	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545055	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545061	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9545063	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9545065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545067	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545068	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545069	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545073	0.97[ASN][1000 genomes]
rs9545076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545078	0.97[ASN][1000 genomes]
rs9545079	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545082	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9545087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9545090	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9545092	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9545093	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9545097	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9545101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9565482	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9565483	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9565485	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9565486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565487	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9565488	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9565489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9565491	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565492	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9565497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9565510	0.81[JPT][hapmap]
rs9574402	0.97[ASN][1000 genomes]
rs9574405	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9574406	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9574409	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9574410	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9574411	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9574416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9574422	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9593391	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9593396	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9601211	0.99[ASN][1000 genomes]
rs9601217	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9635027	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976249	chr13:79888890-79898094	Strong transcription Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12865187	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79865000-79893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:79881800-79892800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:79882000-79894000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr13:79882200-79891800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:79882200-79892800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:79882200-79893600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr13:79882200-79894400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:79882200-79894400	Weak transcription	Brain Angular Gyrus	brain
9	chr13:79882200-79895600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:79882200-79899200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr13:79882200-79907400	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:79882200-79907600	Weak transcription	Brain Anterior Caudate	brain
13	chr13:79882200-79909800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:79882400-79890800	Weak transcription	HMEC	breast
15	chr13:79882400-79891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:79882400-79891800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:79882400-79891800	Weak transcription	Adipose Nuclei	Adipose
18	chr13:79882400-79892000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr13:79882400-79892800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:79882400-79893200	Weak transcription	HepG2	liver
21	chr13:79882400-79894400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr13:79882400-79894400	Weak transcription	Osteobl	bone
23	chr13:79882400-79904400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr13:79882400-79905000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:79882400-79911200	Weak transcription	Left Ventricle	heart
26	chr13:79882400-79911200	Weak transcription	Ovary	ovary
27	chr13:79882400-79914400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:79882400-79925000	Weak transcription	HSMMtube	muscle
29	chr13:79882600-79891200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:79882600-79894400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr13:79883800-79891600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr13:79884000-79899400	Weak transcription	Psoas Muscle	Psoas
33	chr13:79884000-79905200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr13:79884200-79892800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr13:79884400-79909000	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:79884800-79893600	Weak transcription	NH-A	brain
37	chr13:79884800-79895600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:79885000-79891800	Weak transcription	Fetal Intestine Large	intestine
39	chr13:79885000-79892200	Weak transcription	Fetal Thymus	thymus
40	chr13:79885400-79892000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr13:79885800-79891800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:79886400-79891600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr13:79886400-79892800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr13:79886400-79893000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr13:79886400-79893200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr13:79886400-79894200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr13:79886400-79911200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr13:79886600-79892000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr13:79886600-79900000	Weak transcription	Fetal Kidney	kidney
50	chr13:79886600-79950200	Weak transcription	Fetal Brain Male	brain

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