Variant report

Variant	rs9545047
Chromosome Location	chr13:79859456-79859457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 193 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:193)

rs_ID	r²[population]
rs1007569	0.96[ASN][1000 genomes]
rs1028770	0.96[ASN][1000 genomes]
rs10444623	0.86[ASN][1000 genomes]
rs12865187	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs12871015	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs12872328	0.83[ASN][1000 genomes]
rs12875039	0.94[ASN][1000 genomes]
rs12877507	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1324868	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1324870	0.97[ASN][1000 genomes]
rs1408657	0.94[ASN][1000 genomes]
rs1408658	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1409018	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs1409019	0.96[ASN][1000 genomes]
rs1410332	0.96[ASN][1000 genomes]
rs1410336	0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs1626333	0.98[ASN][1000 genomes]
rs1748761	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1748767	0.87[ASN][1000 genomes]
rs1748768	0.86[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs1749983	0.93[ASN][1000 genomes]
rs1752646	0.94[ASN][1000 genomes]
rs1752647	0.94[ASN][1000 genomes]
rs1752648	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1752649	0.84[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1853830	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1856996	0.97[ASN][1000 genomes]
rs1856997	0.99[ASN][1000 genomes]
rs1927506	0.96[ASN][1000 genomes]
rs1980883	0.95[ASN][1000 genomes]
rs2025913	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2057573	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2147566	0.98[ASN][1000 genomes]
rs2182009	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2182010	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2182873	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2265377	0.85[CHB][hapmap]
rs2265378	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2274555	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2763809	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2763810	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2765079	0.94[ASN][1000 genomes]
rs2769552	0.91[ASN][1000 genomes]
rs28579970	0.95[ASN][1000 genomes]
rs2876739	0.98[ASN][1000 genomes]
rs2876740	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs3187338	0.86[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs36152718	0.90[ASN][1000 genomes]
rs3742117	0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs3742118	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs3742119	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3742122	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs3752994	0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs3818563	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs3903388	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4146473	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs4264284	0.94[ASN][1000 genomes]
rs4328330	0.93[ASN][1000 genomes]
rs4351945	0.91[ASN][1000 genomes]
rs4497554	0.93[ASN][1000 genomes]
rs4573813	0.99[ASN][1000 genomes]
rs4884129	0.93[ASN][1000 genomes]
rs4885625	0.99[ASN][1000 genomes]
rs4885626	0.96[ASN][1000 genomes]
rs4885627	0.96[ASN][1000 genomes]
rs4885628	0.94[ASN][1000 genomes]
rs4885629	0.95[ASN][1000 genomes]
rs56911077	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs643778	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6563096	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6563098	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs6563100	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs6563104	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7140027	0.95[ASN][1000 genomes]
rs7317343	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs7317416	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7319212	0.87[ASN][1000 genomes]
rs7319252	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7319320	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7322167	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7322673	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7322744	0.93[ASN][1000 genomes]
rs7322756	0.87[ASN][1000 genomes]
rs7324006	0.87[ASN][1000 genomes]
rs7327386	0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs7327603	0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7328494	0.82[CHB][hapmap]
rs7329331	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7331872	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7332004	0.86[ASN][1000 genomes]
rs7332367	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7332913	0.80[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7333904	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7336581	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7338170	0.98[ASN][1000 genomes]
rs7338530	1.00[YRI][hapmap]
rs7338677	0.93[ASN][1000 genomes]
rs7358847	0.85[ASN][1000 genomes]
rs7981067	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7983344	0.97[ASN][1000 genomes]
rs7987193	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7987769	0.86[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs7988331	0.98[ASN][1000 genomes]
rs7988784	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7995243	0.87[ASN][1000 genomes]
rs7996652	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7998837	0.86[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs8001281	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8002633	0.85[ASN][1000 genomes]
rs8002648	0.85[ASN][1000 genomes]
rs912639	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9285309	0.94[ASN][1000 genomes]
rs9285310	0.94[ASN][1000 genomes]
rs9318621	0.86[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs9318623	0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs9318624	0.94[ASN][1000 genomes]
rs9318625	0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs9318626	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9318627	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9318633	0.85[ASN][1000 genomes]
rs9318634	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9318640	0.86[CHB][hapmap]
rs9318641	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs943709	0.97[ASN][1000 genomes]
rs943710	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs943711	0.97[ASN][1000 genomes]
rs943712	0.97[ASN][1000 genomes]
rs9530889	0.95[ASN][1000 genomes]
rs9530891	0.99[ASN][1000 genomes]
rs9530893	0.99[ASN][1000 genomes]
rs9530894	0.94[ASN][1000 genomes]
rs9530895	0.94[ASN][1000 genomes]
rs9530896	0.94[ASN][1000 genomes]
rs9530897	0.94[ASN][1000 genomes]
rs9530899	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9530900	0.93[ASN][1000 genomes]
rs9530901	0.86[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs9530902	0.86[ASN][1000 genomes]
rs9530904	0.85[ASN][1000 genomes]
rs9530905	0.85[ASN][1000 genomes]
rs9530906	0.83[ASN][1000 genomes]
rs9530913	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9530914	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9545048	0.99[ASN][1000 genomes]
rs9545052	0.98[ASN][1000 genomes]
rs9545053	0.98[ASN][1000 genomes]
rs9545054	0.98[ASN][1000 genomes]
rs9545055	0.98[ASN][1000 genomes]
rs9545061	0.97[ASN][1000 genomes]
rs9545063	0.86[ASN][1000 genomes]
rs9545065	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs9545066	0.86[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs9545067	0.86[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs9545068	0.94[ASN][1000 genomes]
rs9545069	0.94[ASN][1000 genomes]
rs9545073	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545076	0.86[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs9545078	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545079	0.92[ASN][1000 genomes]
rs9545082	0.87[ASN][1000 genomes]
rs9545083	0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs9545085	0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs9545086	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9545087	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9545090	0.86[ASN][1000 genomes]
rs9545092	0.84[ASN][1000 genomes]
rs9545093	0.84[ASN][1000 genomes]
rs9545097	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs9545101	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs9565482	0.98[ASN][1000 genomes]
rs9565483	0.98[ASN][1000 genomes]
rs9565485	0.95[ASN][1000 genomes]
rs9565486	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs9565487	0.94[ASN][1000 genomes]
rs9565488	0.94[ASN][1000 genomes]
rs9565489	0.85[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs9565491	0.91[ASN][1000 genomes]
rs9565492	0.93[ASN][1000 genomes]
rs9565497	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9574402	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9574405	0.93[ASN][1000 genomes]
rs9574406	0.94[ASN][1000 genomes]
rs9574409	0.86[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs9574410	0.94[ASN][1000 genomes]
rs9574411	0.92[ASN][1000 genomes]
rs9574413	1.00[YRI][hapmap]
rs9574416	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9574422	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs9593391	0.94[ASN][1000 genomes]
rs9593396	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9601211	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9601217	0.86[ASN][1000 genomes]
rs9635027	0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9545047	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79854600-79862000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:79856000-79864800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:79856400-79862000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:79856400-79862000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:79856600-79861000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:79857200-79861400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:79857400-79861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:79857400-79861200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:79857400-79861200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:79857400-79861600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:79857600-79861200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:79857600-79861200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr13:79857600-79862000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr13:79857800-79863400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr13:79858000-79861000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:79858000-79861600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:79858000-79862000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr13:79858200-79860000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:79859400-79866600	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links