Variant report

Variant	rs943709
Chromosome Location	chr13:79857125-79857126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs1007569	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1028770	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10444623	0.84[ASN][1000 genomes]
rs12865187	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12871015	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12872328	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12875039	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1324870	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1408657	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1408658	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1409018	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1409019	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410332	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410336	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1626333	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1748767	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1748768	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1749983	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1752646	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1752647	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1752648	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1752649	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856996	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1856997	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1927506	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980883	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025913	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2057573	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2147566	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182010	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2182873	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274555	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2765079	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2769552	0.88[ASN][1000 genomes]
rs28579970	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2876739	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3187338	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36152718	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3742117	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3742118	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3742119	0.93[ASN][1000 genomes]
rs3752994	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818563	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3903388	0.93[ASN][1000 genomes]
rs4264284	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4328330	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4351945	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4497554	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4573813	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4884129	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4885625	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885626	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885627	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885628	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4885629	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56911077	0.91[ASN][1000 genomes]
rs6563096	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563098	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7140027	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7317343	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7317416	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7319212	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7319252	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7319320	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322167	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322673	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7322744	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7322756	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7324006	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7327386	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7327603	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7332004	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7332367	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7332913	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7333904	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7338170	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7338677	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7358847	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7981067	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7983344	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7987769	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7988331	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7988784	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7995243	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7996652	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7998837	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8002633	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8002648	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9285309	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9285310	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9318621	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9318623	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9318624	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9318625	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9318626	0.91[ASN][1000 genomes]
rs9318627	0.91[ASN][1000 genomes]
rs9318633	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9318634	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs943710	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943712	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9530889	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530893	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530894	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9530895	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9530896	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9530897	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9530900	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9530901	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9530902	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9530904	0.82[ASN][1000 genomes]
rs9530905	0.82[ASN][1000 genomes]
rs9530906	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9545047	0.97[ASN][1000 genomes]
rs9545048	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545052	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545053	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545054	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545055	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545061	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545063	0.84[ASN][1000 genomes]
rs9545065	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545066	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545067	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545068	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545069	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545073	0.93[ASN][1000 genomes]
rs9545076	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545078	0.93[ASN][1000 genomes]
rs9545079	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545082	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9545083	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9545085	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9545086	0.84[ASN][1000 genomes]
rs9545087	0.86[ASN][1000 genomes]
rs9545090	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9545092	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9545093	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9565482	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565483	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565485	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9565486	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9565487	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565488	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565489	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565491	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9565492	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9574402	0.96[ASN][1000 genomes]
rs9574405	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9574406	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9574409	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9574410	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9574411	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9593391	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9601211	0.94[ASN][1000 genomes]
rs9601217	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9635027	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs943709	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79854000-79857600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:79854000-79857600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:79854000-79858000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:79854000-79858200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:79854200-79858000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:79854400-79857200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr13:79854600-79858800	Weak transcription	Pancreas	Pancrea
8	chr13:79854600-79862000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:79855800-79857200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:79856000-79857400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:79856000-79864800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:79856200-79857400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:79856200-79857600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:79856400-79857200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:79856400-79857400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:79856400-79858000	Enhancers	Fetal Intestine Small	intestine
17	chr13:79856400-79862000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:79856400-79862000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:79856600-79857600	Weak transcription	Fetal Intestine Large	intestine
20	chr13:79856600-79857600	Enhancers	Hela-S3	cervix
21	chr13:79856600-79857800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr13:79856600-79861000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:79856800-79857200	Flanking Active TSS	Liver	Liver
24	chr13:79856800-79857600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr13:79856800-79857600	Enhancers	HepG2	liver
26	chr13:79856800-79858000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr13:79857000-79857400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr13:79857000-79857600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr13:79857000-79857800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:79857000-79858000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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