Variant report

Variant	rs28579970
Chromosome Location	chr13:79882861-79882862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1007569	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1028770	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10444623	0.87[ASN][1000 genomes]
rs12865187	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12871015	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12872328	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12875039	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408657	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1408658	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409018	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1409019	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1410332	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1410336	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1626333	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748767	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1748768	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1749983	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1752646	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1752647	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1752648	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1752649	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1856996	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856997	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927506	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1980883	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025913	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2057573	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147566	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182010	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2182873	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2274554	0.84[AFR][1000 genomes]
rs2274555	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2765079	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2769552	0.92[ASN][1000 genomes]
rs2876739	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3187338	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36152718	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3742117	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742118	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742119	0.96[ASN][1000 genomes]
rs3752994	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3818563	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3903388	0.96[ASN][1000 genomes]
rs4264284	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4328330	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4351945	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4497554	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4573813	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4884129	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885625	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4885626	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4885627	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4885628	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4885629	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56911077	0.94[ASN][1000 genomes]
rs6563096	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6563098	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7140027	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7317343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7317416	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7319212	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7319252	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7319320	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7322167	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7322673	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7322744	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7322756	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7324006	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7327386	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7327603	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7332004	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7332367	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7332913	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7333904	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7338170	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7338677	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358847	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7981067	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7983344	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7987769	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7988331	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7988784	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7995243	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7996652	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7998837	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8002633	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8002648	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9285309	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285310	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318621	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318623	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318624	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9318625	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9318626	0.94[ASN][1000 genomes]
rs9318627	0.94[ASN][1000 genomes]
rs9318633	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9318634	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943709	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943710	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs943711	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943712	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530889	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9530891	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530893	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9530894	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530895	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530896	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530897	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530900	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530901	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530902	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9530904	0.86[ASN][1000 genomes]
rs9530905	0.86[ASN][1000 genomes]
rs9530906	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9545047	0.95[ASN][1000 genomes]
rs9545048	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545052	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545053	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545054	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545055	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545061	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545063	0.87[ASN][1000 genomes]
rs9545065	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9545066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9545067	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545068	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545069	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545073	0.96[ASN][1000 genomes]
rs9545076	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9545078	0.96[ASN][1000 genomes]
rs9545079	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545082	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9545083	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9545085	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9545086	0.87[ASN][1000 genomes]
rs9545087	0.89[ASN][1000 genomes]
rs9545090	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9545092	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9545093	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9565482	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565483	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565486	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9565487	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565488	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565489	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565491	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565492	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9574402	0.96[ASN][1000 genomes]
rs9574405	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9574406	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9574409	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9574410	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9574411	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9593391	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9601211	0.98[ASN][1000 genomes]
rs9601217	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9635027	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28579970	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79865000-79893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:79881800-79886200	Weak transcription	A549	lung
3	chr13:79881800-79892800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:79882000-79894000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr13:79882200-79883600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:79882200-79883800	Weak transcription	Lung	lung
7	chr13:79882200-79886200	Weak transcription	Fetal Stomach	stomach
8	chr13:79882200-79886400	Weak transcription	Brain Substantia Nigra	brain
9	chr13:79882200-79890600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:79882200-79891800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:79882200-79892800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:79882200-79893600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr13:79882200-79894400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr13:79882200-79894400	Weak transcription	Brain Angular Gyrus	brain
15	chr13:79882200-79895600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr13:79882200-79899200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr13:79882200-79907400	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:79882200-79907600	Weak transcription	Brain Anterior Caudate	brain
19	chr13:79882200-79909800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:79882400-79883600	Weak transcription	Fetal Lung	lung
21	chr13:79882400-79883800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:79882400-79883800	Weak transcription	Gastric	stomach
23	chr13:79882400-79885400	Weak transcription	NHLF	lung
24	chr13:79882400-79885600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:79882400-79886200	Weak transcription	HSMM	muscle
26	chr13:79882400-79886400	Weak transcription	Colon Smooth Muscle	Colon
27	chr13:79882400-79888400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr13:79882400-79890800	Weak transcription	HMEC	breast
29	chr13:79882400-79891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:79882400-79891800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr13:79882400-79891800	Weak transcription	Adipose Nuclei	Adipose
32	chr13:79882400-79892000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr13:79882400-79892800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr13:79882400-79893200	Weak transcription	HepG2	liver
35	chr13:79882400-79894400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr13:79882400-79894400	Weak transcription	Osteobl	bone
37	chr13:79882400-79904400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr13:79882400-79905000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr13:79882400-79911200	Weak transcription	Left Ventricle	heart
40	chr13:79882400-79911200	Weak transcription	Ovary	ovary
41	chr13:79882400-79914400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:79882400-79925000	Weak transcription	HSMMtube	muscle
43	chr13:79882600-79885400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr13:79882600-79891200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:79882600-79894400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr13:79882800-79887600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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