Variant report

Variant	rs9574413
Chromosome Location	chr13:79936544-79936545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:79915442..79917474-chr13:79934906..79936964,2	K562	blood:
2	chr13:79936404..79939084-chr13:79941212..79942722,2	K562	blood:
3	chr13:79936077..79937077-chr3:73160028..73160608,4	HCT-116	colon:

Variant related genes	Relation type
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1475797	1.00[YRI][hapmap]
rs1577416	1.00[YRI][hapmap]
rs17071512	1.00[YRI][hapmap]
rs17071545	1.00[YRI][hapmap]
rs2760105	1.00[YRI][hapmap]
rs2783119	1.00[YRI][hapmap]
rs3742119	1.00[YRI][hapmap]
rs3903388	1.00[YRI][hapmap]
rs7338530	1.00[YRI][hapmap]
rs9318626	1.00[YRI][hapmap]
rs9318627	1.00[YRI][hapmap]
rs9545087	1.00[YRI][hapmap]
rs9545097	1.00[YRI][hapmap]
rs9545101	1.00[YRI][hapmap]
rs9574422	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9574413	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79886600-79950200	Weak transcription	Fetal Brain Male	brain
2	chr13:79887200-79946600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr13:79888000-79942800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:79888200-79947000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr13:79888400-79947000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:79891600-79946800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:79891600-79947000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr13:79891600-79947000	Strong transcription	Dnd41	blood
9	chr13:79893200-79957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:79894200-79940200	Weak transcription	Small Intestine	intestine
11	chr13:79894400-79950200	Weak transcription	Stomach Mucosa	stomach
12	chr13:79898200-79939200	Weak transcription	Fetal Stomach	stomach
13	chr13:79898600-79941200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:79899000-79946400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:79901400-79939200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:79906200-79939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:79909600-79939600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr13:79911600-79938600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:79911600-79939200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:79911600-79939200	Weak transcription	Gastric	stomach
21	chr13:79911600-79944000	Weak transcription	Esophagus	oesophagus
22	chr13:79911800-79939200	Weak transcription	Spleen	Spleen
23	chr13:79912400-79939200	Weak transcription	Aorta	Aorta
24	chr13:79920800-79939200	Weak transcription	Pancreas	Pancrea
25	chr13:79921200-79947000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:79921600-79946800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr13:79922400-79947000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:79922800-79946600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr13:79923000-79950600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr13:79923200-79946800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:79923800-79946400	Strong transcription	Fetal Thymus	thymus
32	chr13:79924000-79947000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr13:79924200-79937800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr13:79924400-79946200	Strong transcription	Placenta	Placenta
35	chr13:79924400-79947000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr13:79924800-79946400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr13:79925000-79946200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr13:79925200-79938400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr13:79925600-79946400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr13:79925600-79947000	Strong transcription	Fetal Intestine Large	intestine
41	chr13:79926000-79941200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr13:79926000-79946400	Strong transcription	Adipose Nuclei	Adipose
43	chr13:79926400-79946400	Strong transcription	Fetal Lung	lung
44	chr13:79926800-79946400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr13:79926800-79947000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr13:79927000-79939200	Weak transcription	HSMMtube	muscle
47	chr13:79928800-79945200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr13:79929200-79939200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr13:79929200-79939200	Weak transcription	Thymus	Thymus
50	chr13:79929400-79937800	Weak transcription	Left Ventricle	heart

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