Variant report

Variant	rs9565500
Chromosome Location	chr13:80007551-80007552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 182 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1022891	0.84[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap]
rs11620233	0.82[ASN][1000 genomes]
rs1212082	0.80[CHB][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap]
rs12865187	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12871015	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs12877507	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1324868	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1335368	0.88[JPT][hapmap]
rs1335370	0.88[JPT][hapmap]
rs1408049	0.88[JPT][hapmap]
rs1408658	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1409018	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1410336	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1475797	0.81[CHB][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap]
rs1577416	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1577418	0.88[JPT][hapmap]
rs1590465	0.93[ASN][1000 genomes]
rs1616547	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1619669	0.90[ASN][1000 genomes]
rs1624537	0.97[ASN][1000 genomes]
rs1748761	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1748762	0.96[ASN][1000 genomes]
rs1748763	0.96[ASN][1000 genomes]
rs1748768	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1748769	0.97[ASN][1000 genomes]
rs1749982	0.90[ASN][1000 genomes]
rs1752648	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1752649	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1853830	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1886494	0.93[ASN][1000 genomes]
rs1980764	0.89[ASN][1000 genomes]
rs2025913	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2031815	0.94[ASN][1000 genomes]
rs2057573	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs2095477	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147568	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182009	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2182010	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2182873	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2265377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265381	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2265382	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274555	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2296287	0.96[ASN][1000 genomes]
rs2477395	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2477397	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484345	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2760102	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2760105	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2760106	0.88[JPT][hapmap]
rs2763809	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2763810	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[ASN][1000 genomes]
rs2765078	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2783119	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2783121	0.88[JPT][hapmap]
rs2783122	0.88[JPT][hapmap]
rs2876740	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[ASN][1000 genomes]
rs314689	0.87[ASN][1000 genomes]
rs314690	0.91[ASN][1000 genomes]
rs314692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs314693	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs314694	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs314695	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3187338	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs35476664	0.89[ASN][1000 genomes]
rs3742117	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs3742118	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3742119	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs3742120	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3742122	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3752994	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3764150	0.87[ASN][1000 genomes]
rs3818563	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs3903388	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4146473	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.83[ASN][1000 genomes]
rs416660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs418150	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4605023	0.93[ASN][1000 genomes]
rs4885636	0.88[JPT][hapmap]
rs57821487	0.94[ASN][1000 genomes]
rs586219	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs643778	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563098	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs6563100	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.92[ASN][1000 genomes]
rs6563104	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6563113	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7317343	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7317416	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7319252	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7319320	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7321186	0.93[ASN][1000 genomes]
rs7322167	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7322673	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7322901	0.93[ASN][1000 genomes]
rs7323246	0.94[ASN][1000 genomes]
rs7327386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7327603	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7328494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7329331	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs7330479	0.94[ASN][1000 genomes]
rs7331525	0.96[ASN][1000 genomes]
rs7331766	0.94[ASN][1000 genomes]
rs7331867	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7331872	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7332367	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs7332913	0.82[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs7336186	0.93[ASN][1000 genomes]
rs7336581	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7336939	0.91[ASN][1000 genomes]
rs7336979	0.96[ASN][1000 genomes]
rs7338530	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7338678	0.94[ASN][1000 genomes]
rs7339303	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7981067	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs7981500	0.94[ASN][1000 genomes]
rs7986306	0.87[ASN][1000 genomes]
rs7987193	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7987769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7988784	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7990321	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7990344	0.86[JPT][hapmap]
rs7996652	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7998837	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs8001281	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8001308	0.89[ASN][1000 genomes]
rs8001392	0.83[ASN][1000 genomes]
rs8001622	0.97[ASN][1000 genomes]
rs8001795	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8002042	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs8002838	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912639	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[ASN][1000 genomes]
rs9318621	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318623	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318625	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9318626	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs9318627	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs9318634	1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap]
rs9318638	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318640	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9318641	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530899	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9530901	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs9530913	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9530914	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9530915	0.93[ASN][1000 genomes]
rs9530917	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9530920	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545065	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545066	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs9545067	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9545076	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs9545083	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545085	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545086	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545087	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9545097	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9545101	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9545104	0.94[ASN][1000 genomes]
rs9545106	0.94[ASN][1000 genomes]
rs9545108	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545109	0.97[ASN][1000 genomes]
rs9545113	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545114	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9565486	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9565489	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9565496	0.93[ASN][1000 genomes]
rs9565497	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9565510	0.87[JPT][hapmap]
rs9574409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9574416	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9574418	0.95[ASN][1000 genomes]
rs9574419	0.93[ASN][1000 genomes]
rs9574420	0.93[ASN][1000 genomes]
rs9574422	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9574434	0.88[JPT][hapmap]
rs9593396	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs9601226	0.93[ASN][1000 genomes]
rs9601227	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs987284	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
2	chr13:80001800-80009000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:80003200-80009200	Weak transcription	Fetal Heart	heart
4	chr13:80006400-80009000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:80007400-80009800	Weak transcription	Fetal Intestine Small	intestine

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