Variant report

Variant	rs7338678
Chromosome Location	chr13:79999433-79999434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:79988180..79990725-chr13:79998257..80000787,2	MCF-7	breast:
2	chr13:79991045..79992865-chr13:79998283..80000487,2	K562	blood:
3	chr13:79997230..79999952-chr13:80054679..80057459,3	K562	blood:
4	chr13:79998273..79999800-chr13:80114332..80116846,2	K562	blood:
5	chr13:79996856..79999790-chr13:80053945..80056536,3	MCF-7	breast:
6	chr13:79998349..80000455-chr13:80001277..80003996,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDFIP2-2	chr13:79997687-80001485	XLOC_010445

No data

Variant related genes	Relation type
ENSG00000102471	Chromatin interaction
ENSG00000232132	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11620233	0.82[ASN][1000 genomes]
rs12877507	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1324868	0.94[ASN][1000 genomes]
rs1590465	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1616547	0.81[ASN][1000 genomes]
rs1619669	0.89[ASN][1000 genomes]
rs1624537	0.96[ASN][1000 genomes]
rs1748761	0.95[ASN][1000 genomes]
rs1748762	0.95[ASN][1000 genomes]
rs1748763	0.95[ASN][1000 genomes]
rs1748769	0.96[ASN][1000 genomes]
rs1749982	0.89[ASN][1000 genomes]
rs1853830	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1886494	0.94[ASN][1000 genomes]
rs1980764	0.90[ASN][1000 genomes]
rs2031815	0.93[ASN][1000 genomes]
rs2095477	0.92[ASN][1000 genomes]
rs2147568	0.96[ASN][1000 genomes]
rs2182009	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2265377	0.95[ASN][1000 genomes]
rs2265378	0.95[ASN][1000 genomes]
rs2265381	0.96[ASN][1000 genomes]
rs2265382	0.96[ASN][1000 genomes]
rs2296287	0.95[ASN][1000 genomes]
rs2477395	0.96[ASN][1000 genomes]
rs2477397	0.96[ASN][1000 genomes]
rs2484345	0.95[ASN][1000 genomes]
rs2763809	0.95[ASN][1000 genomes]
rs2763810	0.95[ASN][1000 genomes]
rs2765078	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2876740	0.96[ASN][1000 genomes]
rs314689	0.88[ASN][1000 genomes]
rs314690	0.88[ASN][1000 genomes]
rs314692	0.95[ASN][1000 genomes]
rs314693	0.95[ASN][1000 genomes]
rs314694	0.95[ASN][1000 genomes]
rs314695	0.97[ASN][1000 genomes]
rs35476664	0.90[ASN][1000 genomes]
rs3742120	0.92[ASN][1000 genomes]
rs3742122	0.92[ASN][1000 genomes]
rs3764150	0.88[ASN][1000 genomes]
rs4146473	0.82[ASN][1000 genomes]
rs416660	0.95[ASN][1000 genomes]
rs418150	0.95[ASN][1000 genomes]
rs4605023	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57821487	0.93[ASN][1000 genomes]
rs586219	0.95[ASN][1000 genomes]
rs643778	0.95[ASN][1000 genomes]
rs6563100	0.91[ASN][1000 genomes]
rs6563104	0.93[ASN][1000 genomes]
rs7321186	0.92[ASN][1000 genomes]
rs7322901	0.92[ASN][1000 genomes]
rs7323246	0.93[ASN][1000 genomes]
rs7328494	0.95[ASN][1000 genomes]
rs7329331	0.93[ASN][1000 genomes]
rs7330479	0.93[ASN][1000 genomes]
rs7331525	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7331766	0.93[ASN][1000 genomes]
rs7331867	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7331872	0.94[ASN][1000 genomes]
rs7336186	0.94[ASN][1000 genomes]
rs7336581	0.94[ASN][1000 genomes]
rs7336939	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7336979	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7981500	0.93[ASN][1000 genomes]
rs7986306	0.86[ASN][1000 genomes]
rs7987193	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7990321	0.96[ASN][1000 genomes]
rs8001281	0.96[ASN][1000 genomes]
rs8001308	0.88[ASN][1000 genomes]
rs8001392	0.82[ASN][1000 genomes]
rs8001622	0.96[ASN][1000 genomes]
rs8001795	0.95[ASN][1000 genomes]
rs8002838	0.95[ASN][1000 genomes]
rs912639	0.96[ASN][1000 genomes]
rs9318638	0.96[ASN][1000 genomes]
rs9318640	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9318641	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9530913	0.93[ASN][1000 genomes]
rs9530914	0.92[ASN][1000 genomes]
rs9530915	0.92[ASN][1000 genomes]
rs9530917	0.96[ASN][1000 genomes]
rs9530920	0.95[ASN][1000 genomes]
rs9545097	0.92[ASN][1000 genomes]
rs9545101	0.92[ASN][1000 genomes]
rs9545104	0.93[ASN][1000 genomes]
rs9545106	0.93[ASN][1000 genomes]
rs9545108	0.95[ASN][1000 genomes]
rs9545109	0.96[ASN][1000 genomes]
rs9545113	0.95[ASN][1000 genomes]
rs9545114	0.95[ASN][1000 genomes]
rs9565496	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9565497	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9565500	0.94[ASN][1000 genomes]
rs9574416	0.94[ASN][1000 genomes]
rs9574418	0.92[ASN][1000 genomes]
rs9574419	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9574420	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9574422	0.95[ASN][1000 genomes]
rs9593396	0.91[ASN][1000 genomes]
rs9601226	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9601227	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7338678	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79980800-80007200	Weak transcription	Spleen	Spleen
2	chr13:79981000-80007200	Weak transcription	Aorta	Aorta
3	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
4	chr13:79981400-80000200	Weak transcription	Psoas Muscle	Psoas
5	chr13:79981800-80001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:79982600-80006400	Weak transcription	Gastric	stomach
7	chr13:79983600-80003400	Weak transcription	GM12878-XiMat	blood
8	chr13:79987800-80001400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:79998000-80002000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:79998800-80006000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:79999200-80001400	Weak transcription	Dnd41	blood

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