Variant report

Variant	rs2783660
Chromosome Location	chr1:76651624-76651625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17098357	1.00[EUR][1000 genomes]
rs289696	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76636600-76652800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76643800-76651800	Weak transcription	Fetal Kidney	kidney
3	chr1:76644800-76653200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:76645400-76652600	Weak transcription	HUVEC	blood vessel
5	chr1:76646600-76652600	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
7	chr1:76646800-76652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76646800-76653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:76649000-76652600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:76650800-76651800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:76651600-76651800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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