Variant report

Variant	rs289696
Chromosome Location	chr1:76627744-76627745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17098357	0.83[EUR][1000 genomes]
rs2783660	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76620600-76627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:76620800-76627800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76621000-76630600	Weak transcription	Psoas Muscle	Psoas
5	chr1:76621000-76630800	Weak transcription	Primary B cells from cord blood	blood
6	chr1:76626000-76627800	Enhancers	Fetal Intestine Small	intestine
7	chr1:76627000-76627800	Enhancers	Fetal Muscle Leg	muscle
8	chr1:76627600-76628400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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