Variant report

Variant	rs2784039
Chromosome Location	chr9:139689359-139689360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr9:139689181-139689831	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:139689004-139689415	A549	lung:	n/a	n/a
3	POLR2A	chr9:139689229-139689668	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr9:139688742-139691900	K562	blood:	n/a	n/a
5	POLR2A	chr9:139689295-139689514	U87	brain:	n/a	n/a
6	POLR2A	chr9:139689019-139689383	HCT-116	colon:	n/a	n/a
7	NFIC	chr9:139689295-139689712	HepG2	liver:	n/a	n/a
8	MBD4	chr9:139689139-139689744	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:139689028-139689641	K562	blood:	n/a	n/a
10	POLR2A	chr9:139689004-139689607	PBDE	blood:	n/a	n/a
11	POLR2A	chr9:139682141-139704512	HepG2	liver:	n/a	n/a
12	POLR2A	chr9:139685630-139691999	HepG2	liver:	n/a	n/a
13	POLR2A	chr9:139688921-139691268	MCF-7	breast:	n/a	n/a
14	POLR2A	chr9:139689041-139689577	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr9:139689194-139689658	MCF10A-Er-Src	breast:	n/a	n/a
16	POLR2A	chr9:139688817-139689767	HepG2	liver:	n/a	n/a
17	HEY1	chr9:139688765-139692016	HepG2	liver:	n/a	n/a
18	POLR2A	chr9:139689076-139689733	ECC-1	luminal epithelium:	n/a	n/a
19	POLR2A	chr9:139689197-139689507	K562	blood:	n/a	n/a
20	POLR2A	chr9:139689192-139689740	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:139688964-139689556	MCF-7	breast:	n/a	n/a
22	POLR2A	chr9:139688936-139689729	K562	blood:	n/a	n/a
23	POLR2A	chr9:139688955-139689791	MCF-7	breast:	n/a	n/a
24	FOSL2	chr9:139688905-139689866	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:139689085-139689745	MCF10A-Er-Src	breast:	n/a	n/a
26	POLR2A	chr9:139688788-139691342	SK-N-MC	brain:	n/a	n/a
27	POLR2A	chr9:139689294-139689514	U87	brain:	n/a	n/a
28	POLR2A	chr9:139688785-139691987	HepG2	liver:	n/a	n/a
29	POLR2A	chr9:139688775-139689789	PFSK-1	brain:	n/a	n/a
30	POLR2A	chr9:139689020-139689748	HCT-116	colon:	n/a	n/a
31	POLR2A	chr9:139689015-139689720	Raji	blood:	n/a	n/a
32	POLR2A	chr9:139689241-139689492	GM12878	blood:	n/a	n/a
33	POLR2A	chr9:139689040-139689731	HL-60	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139688353..139690052-chr9:139717052..139718685,2	MCF-7	breast:
2	chr9:139688767..139692141-chr9:139962525..139965411,3	MCF-7	breast:
3	chr9:139618562..139620784-chr9:139689004..139691384,2	K562	blood:
4	chr9:139687375..139689603-chr9:139852507..139855187,2	MCF-7	breast:
5	chr9:139682195..139706361-chr9:139728316..139752024,110	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273066	TF binding region
CCDC183	TF binding region
ENSG00000177943	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000186193	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs2492307	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2498195	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2784035	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784036	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784038	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784040	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2784041	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2784044	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2784045	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2784046	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2784047	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2784048	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2784049	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784050	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784051	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784052	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2784053	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2784054	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2784055	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2784056	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2784057	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2784059	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2811767	0.81[EUR][1000 genomes]
rs2811777	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2811778	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2811779	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2811781	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2811783	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2811784	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2811785	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2811786	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2811788	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7852010	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9411234	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9411237	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9411286	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9411287	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
4	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
5	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
6	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
7	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
8	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
9	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
10	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
11	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
12	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
13	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
15	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
16	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
17	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
18	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
19	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
20	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
21	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
22	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
23	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
24	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
25	nsv894450	chr9:139598108-139776400	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
26	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
27	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
28	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
29	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
30	nsv1051605	chr9:139620105-139728697	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
31	nsv540350	chr9:139620105-139728697	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
32	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
33	nsv466681	chr9:139647074-139693992	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
34	nsv615982	chr9:139647074-139693992	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
35	nsv894457	chr9:139650448-139776400	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
36	nsv540351	chr9:139664948-139703627	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
37	nsv523639	chr9:139669111-139690144	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
38	nsv894458	chr9:139683224-139776400	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
39	nsv894459	chr9:139683224-139787453	Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
40	nsv894460	chr9:139683224-139810595	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
41	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
42	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
43	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139686400-139690400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:139686400-139690800	Weak transcription	Fetal Kidney	kidney
3	chr9:139686400-139692400	Enhancers	Fetal Heart	heart
4	chr9:139686600-139689400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:139686600-139689400	Genic enhancers	Placenta	Placenta
6	chr9:139686600-139690600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:139686800-139690200	Weak transcription	Fetal Brain Female	brain
8	chr9:139686800-139690400	Weak transcription	Right Atrium	heart
9	chr9:139686800-139690600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:139686800-139690600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:139686800-139690600	Weak transcription	HSMMtube	muscle
12	chr9:139686800-139690800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:139686800-139691000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:139686800-139691600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr9:139686800-139692600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:139686800-139693400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:139686800-139693800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:139687000-139689400	Weak transcription	Primary B cells from cord blood	blood
19	chr9:139687000-139690600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:139687000-139690600	Weak transcription	NH-A	brain
21	chr9:139687000-139691600	Weak transcription	Brain Anterior Caudate	brain
22	chr9:139687000-139691600	Weak transcription	HSMM	muscle
23	chr9:139687000-139692200	Weak transcription	Brain Angular Gyrus	brain
24	chr9:139687000-139693400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:139687200-139689400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:139687200-139689600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:139687200-139689600	Strong transcription	Fetal Stomach	stomach
28	chr9:139687200-139690000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:139687200-139690000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:139687200-139690200	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:139687200-139690400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr9:139687200-139690400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr9:139687200-139690400	Weak transcription	Esophagus	oesophagus
34	chr9:139687200-139693600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:139687200-139694400	Weak transcription	Brain Substantia Nigra	brain
36	chr9:139687400-139689400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:139687400-139689400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:139687400-139690200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr9:139687400-139690400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:139687400-139693200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:139687600-139689400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:139687600-139689600	Genic enhancers	Fetal Intestine Large	intestine
43	chr9:139687600-139690200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr9:139687800-139689600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:139687800-139690200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:139687800-139690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:139687800-139690600	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr9:139688000-139689400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:139688000-139689600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:139688000-139690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links