Variant report

Variant	rs2811786
Chromosome Location	chr9:139683224-139683225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:45)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:45 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:139683076-139683662	HepG2	liver:	n/a	n/a
2	TAF1	chr9:139683043-139684180	HepG2	liver:	n/a	n/a
3	HEY1	chr9:139683030-139683291	K562	blood:	n/a	n/a
4	EP300	chr9:139683144-139684307	HepG2	liver:	n/a	n/a
5	CEBPD	chr9:139683144-139683521	HepG2	liver:	n/a	n/a
6	POLR2A	chr9:139682080-139684342	HepG2	liver:	n/a	n/a
7	MBD4	chr9:139683128-139684276	HepG2	liver:	n/a	n/a
8	NFIC	chr9:139683160-139683768	HepG2	liver:	n/a	n/a
9	MYBL2	chr9:139682947-139684367	HepG2	liver:	n/a	n/a
10	TEAD4	chr9:139682952-139683953	K562	blood:	n/a	n/a
11	POLR2A	chr9:139683061-139683920	K562	blood:	n/a	n/a
12	FOSL2	chr9:139683128-139683893	HepG2	liver:	n/a	n/a
13	TCF12	chr9:139683076-139684192	HepG2	liver:	n/a	n/a
14	CUX1	chr9:139683050-139683531	K562	blood:	n/a	n/a
15	RXRA	chr9:139683105-139684165	HepG2	liver:	n/a	n/a
16	HEY1	chr9:139683030-139683294	K562	blood:	n/a	n/a
17	HEY1	chr9:139683038-139683273	HepG2	liver:	n/a	n/a
18	POLR2A	chr9:139682067-139684377	HepG2	liver:	n/a	n/a
19	FOXA2	chr9:139682953-139683256	HepG2	liver:	n/a	n/a
20	POLR2A	chr9:139682989-139683333	K562	blood:	n/a	n/a
21	SP1	chr9:139683033-139684306	HepG2	liver:	n/a	n/a
22	POLR2A	chr9:139682141-139704512	HepG2	liver:	n/a	n/a
23	IRF1	chr9:139682953-139683860	K562	blood:	n/a	n/a
24	IRF1	chr9:139682150-139684007	K562	blood:	n/a	chr9:139682488-139682502
25	ARID3A	chr9:139682991-139683704	K562	blood:	n/a	n/a
26	HDAC2	chr9:139683219-139683549	HepG2	liver:	n/a	n/a
27	POLR2A	chr9:139682992-139683996	PBDE	blood:	n/a	n/a
28	POLR2A	chr9:139683026-139684235	HepG2	liver:	n/a	n/a
29	FOXA1	chr9:139682130-139684280	HepG2	liver:	n/a	n/a
30	POLR2A	chr9:139683159-139683236	HepG2	liver:	n/a	n/a
31	MAX	chr9:139683055-139683362	K562	blood:	n/a	n/a
32	HEY1	chr9:139681928-139688651	HepG2	liver:	n/a	chr9:139685612-139685627
33	FOXA2	chr9:139683039-139683340	A549	lung:	n/a	n/a
34	MYBL2	chr9:139682953-139684376	HepG2	liver:	n/a	n/a
35	TAF1	chr9:139683127-139683524	HepG2	liver:	n/a	n/a
36	KAP1	chr9:139683051-139684096	HEK293	kidney:	n/a	n/a
37	EP300	chr9:139682880-139683271	K562	blood:	n/a	n/a
38	JUND	chr9:139683221-139683485	HepG2	liver:	n/a	n/a
39	TBP	chr9:139683008-139683323	K562	blood:	n/a	n/a
40	POLR2A	chr9:139683098-139683274	A549	lung:	n/a	n/a
41	FOXA1	chr9:139682899-139683326	HepG2	liver:	n/a	n/a
42	NFIC	chr9:139682915-139683825	HepG2	liver:	n/a	n/a
43	ZNF384	chr9:139682959-139683251	K562	blood:	n/a	n/a
44	EP300	chr9:139683186-139684300	HepG2	liver:	n/a	n/a
45	GATA1	chr9:139682237-139684151	PBDE	blood:	n/a	n/a

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139621035..139624561-chr9:139681529..139687287,9	K562	blood:
2	chr9:139682705..139685431-chr9:139821546..139824026,2	K562	blood:
3	chr9:139682366..139684711-chr9:139686192..139687800,2	K562	blood:
4	chr9:139681319..139683453-chr9:140135277..140137086,2	K562	blood:
5	chr9:139681911..139684166-chr9:139803845..139806276,2	MCF-7	breast:
6	chr9:139655064..139662123-chr9:139682792..139687315,8	K562	blood:
7	chr9:139680623..139683449-chr9:139776064..139778512,2	K562	blood:
8	chr9:139681221..139684679-chr9:139733731..139738614,5	K562	blood:
9	chr9:139655316..139662123-chr9:139682792..139687315,9	K562	blood:
10	chr9:139680143..139683670-chr9:139733731..139736557,4	K562	blood:
11	chr9:139683069..139684646-chr9:139931915..139933754,2	K562	blood:
12	chr9:139682349..139684951-chr9:140121379..140123237,2	MCF-7	breast:
13	chr9:139682813..139684569-chr9:139931915..139934593,2	K562	blood:
14	chr9:139679609..139682162-chr9:139682181..139685011,2	K562	blood:
15	chr9:139619782..139621947-chr9:139681602..139685088,3	MCF-7	breast:
16	chr9:139682478..139689029-chr9:139739017..139745111,14	MCF-7	breast:
17	chr9:139680844..139683815-chr9:139842412..139844247,2	K562	blood:
18	chr9:139681106..139687354-chr9:139701145..139707280,8	K562	blood:
19	chr9:139683199..139684717-chr9:139928493..139930688,2	K562	blood:
20	chr9:139682195..139706361-chr9:139728316..139752024,110	MCF-7	breast:

No data

Variant related genes	Relation type
TMEM141	TF binding region
ENSG00000272896	TF binding region
ENSG00000177943	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000233198	Chromatin interaction
ENSG00000177984	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1055995	0.94[CHD][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap]
rs10781515	0.82[ASN][1000 genomes]
rs10781516	1.00[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11789783	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11793962	0.89[JPT][hapmap]
rs12001067	0.82[ASN][1000 genomes]
rs1832147	0.82[ASN][1000 genomes]
rs2248077	0.89[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap]
rs2297722	1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2297723	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs2484657	0.82[ASN][1000 genomes]
rs2492307	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2498193	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2498195	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784034	0.81[MEX][hapmap]
rs2784035	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784036	0.83[CEU][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2784037	0.83[CEU][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2784038	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2784039	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2784040	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2784041	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2784044	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784045	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784046	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784047	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784048	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784049	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784050	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784051	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784052	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2784053	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2784054	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784055	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784057	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784059	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784060	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2784062	0.82[ASN][1000 genomes]
rs2784063	0.82[ASN][1000 genomes]
rs2784064	0.82[ASN][1000 genomes]
rs2784065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2784070	0.89[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap]
rs2811736	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2811767	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2811768	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.82[ASN][1000 genomes]
rs2811769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811770	0.82[ASN][1000 genomes]
rs2811771	0.82[ASN][1000 genomes]
rs2811772	0.82[ASN][1000 genomes]
rs2811777	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811778	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2811779	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811781	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811782	0.97[ASN][1000 genomes]
rs2811783	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811784	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811785	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811788	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34001297	0.82[ASN][1000 genomes]
rs3861026	0.82[ASN][1000 genomes]
rs4256670	0.82[ASN][1000 genomes]
rs4880140	1.00[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4880142	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4880143	0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs62581399	0.83[ASN][1000 genomes]
rs7029239	0.89[JPT][hapmap]
rs7040135	0.82[ASN][1000 genomes]
rs7852010	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9411228	0.82[ASN][1000 genomes]
rs9411234	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9411237	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9411273	0.82[ASN][1000 genomes]
rs9411285	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9411286	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9411287	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs945381	0.89[JPT][hapmap]
rs945383	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
4	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
5	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
6	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
7	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
8	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
9	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
10	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
11	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
12	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
13	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
15	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
16	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
17	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
18	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
19	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
20	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
21	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
22	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
23	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
24	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
25	nsv540348	chr9:139550414-139687876	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
26	nsv894450	chr9:139598108-139776400	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
27	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
28	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
29	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
30	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
31	nsv1051605	chr9:139620105-139728697	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
32	nsv540350	chr9:139620105-139728697	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
33	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
34	nsv466681	chr9:139647074-139693992	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
35	nsv615982	chr9:139647074-139693992	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
36	nsv894457	chr9:139650448-139776400	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
37	nsv540351	chr9:139664948-139703627	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
38	nsv8581	chr9:139666632-139685190	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
39	nsv523639	chr9:139669111-139690144	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
40	nsv894458	chr9:139683224-139776400	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
41	nsv894459	chr9:139683224-139787453	Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
42	nsv894460	chr9:139683224-139810595	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
43	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
44	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
45	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs2811786	NDOR1	cis	parietal	SCAN
rs2811786	LCN15	cis	Temporal Cortex	GTEx
rs2811786	TMEM141	cis	parietal	SCAN
rs2811786	LCN15	cis	parietal	SCAN
rs2811786	CARD9	cis	cerebellum	SCAN
rs2811786	DDX31	cis	parietal	SCAN
rs2811786	TMEM141	cis	lymphoblastoid	seeQTL
rs2811786	PHPT1	cis	cerebellum	SCAN

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139678400-139685000	Enhancers	Fetal Intestine Small	intestine
2	chr9:139679200-139684600	Weak transcription	Fetal Lung	lung
3	chr9:139680000-139684600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:139681000-139684800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:139681800-139685800	Enhancers	Stomach Mucosa	stomach
6	chr9:139682000-139683600	Enhancers	Fetal Thymus	thymus
7	chr9:139682000-139684800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:139682000-139685000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:139682000-139685000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:139682000-139685200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:139682000-139685400	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:139682000-139685400	Enhancers	Placenta	Placenta
13	chr9:139682200-139683400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:139682200-139683400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr9:139682200-139683400	Active TSS	HepG2	liver
16	chr9:139682200-139683600	Flanking Active TSS	K562	blood
17	chr9:139682200-139684000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:139682200-139684600	Weak transcription	Brain Substantia Nigra	brain
19	chr9:139682200-139684800	Weak transcription	Brain Angular Gyrus	brain
20	chr9:139682200-139684800	Weak transcription	HSMM	muscle
21	chr9:139682200-139685000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:139682400-139683400	Active TSS	Colonic Mucosa	Colon
23	chr9:139682400-139683600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:139682400-139684600	Weak transcription	HSMMtube	muscle
25	chr9:139682400-139684800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:139682400-139685000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:139682400-139685000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:139682400-139685000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:139682400-139685400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:139682600-139683400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:139682600-139683600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:139682600-139683800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:139682600-139684600	Weak transcription	Primary B cells from cord blood	blood
34	chr9:139682600-139684600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:139682600-139684600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:139682600-139684600	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:139682600-139684600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:139682600-139684600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:139682600-139684600	Weak transcription	Dnd41	blood
40	chr9:139682600-139684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:139682600-139684800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr9:139682600-139684800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr9:139682600-139684800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:139682600-139684800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:139682600-139684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:139682600-139684800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:139682600-139684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr9:139682600-139684800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:139682600-139684800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:139682600-139684800	Weak transcription	Brain Anterior Caudate	brain

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