Variant report

Variant	rs62581399
Chromosome Location	chr9:139687082-139687083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:139687060-139687210	HRPEpiC	eye:	n/a	n/a
2	MXI1	chr9:139685040-139687172	IMR90	lung:	n/a	chr9:139687092-139687101 chr9:139687090-139687099
3	CREB1	chr9:139685027-139687281	HepG2	liver:	n/a	n/a
4	POLR2A	chr9:139687053-139687208	K562	blood:	n/a	n/a
5	CTCF	chr9:139687020-139687170	WI-38	lung:	n/a	n/a
6	POLR2A	chr9:139682141-139704512	HepG2	liver:	n/a	n/a
7	POLR2A	chr9:139685640-139687254	HepG2	liver:	n/a	n/a
8	POLR2A	chr9:139685630-139691999	HepG2	liver:	n/a	n/a
9	TAF1	chr9:139686699-139687172	HepG2	liver:	n/a	n/a
10	CTCF	chr9:139685671-139687089	A549	lung:	n/a	n/a
11	USF1	chr9:139686778-139687142	HepG2	liver:	n/a	chr9:139686937-139686948
12	HCFC1	chr9:139684596-139687185	Hela-S3	cervix:	n/a	n/a
13	HEY1	chr9:139681928-139688651	HepG2	liver:	n/a	chr9:139685612-139685627
14	POLR2A	chr9:139685643-139687675	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:139685634-139688719	HepG2	liver:	n/a	n/a
16	POLR2A	chr9:139686994-139687147	MCF-7	breast:	n/a	n/a
17	CTCF	chr9:139685563-139687101	HCT-116	colon:	n/a	chr9:139685603-139685616
18	CTCF	chr9:139687000-139687150	K562	blood:	n/a	n/a
19	CTCF	chr9:139687060-139687210	HEK293	kidney:	n/a	n/a

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139683536..139687591-chr9:139921894..139924460,4	MCF-7	breast:
2	chr9:139683659..139687292-chr9:139920616..139923884,4	MCF-7	breast:
3	chr9:139685742..139688116-chr9:140148155..140149665,2	K562	blood:
4	chr9:139682366..139684711-chr9:139686192..139687800,2	K562	blood:
5	chr9:139684658..139687578-chr9:139740553..139743920,5	K562	blood:
6	chr9:139684238..139687578-chr9:139742280..139744165,4	K562	blood:
7	chr9:139683825..139687268-chr9:139871414..139874835,3	K562	blood:
8	chr9:139621035..139624561-chr9:139681529..139687287,9	K562	blood:
9	chr9:139621216..139622875-chr9:139685230..139687360,2	MCF-7	breast:
10	chr9:139685378..139687271-chr9:139915052..139917495,3	MCF-7	breast:
11	chr9:139685391..139688312-chr9:139795592..139798395,3	MCF-7	breast:
12	chr9:139685199..139687807-chr9:139878255..139880218,2	MCF-7	breast:
13	chr9:139685893..139687788-chr9:139748071..139750238,2	K562	blood:
14	chr9:139684892..139687578-chr9:139837356..139841601,5	MCF-7	breast:
15	chr9:139684839..139687692-chr9:140133379..140136351,2	K562	blood:
16	chr9:139655064..139662123-chr9:139682792..139687315,8	K562	blood:
17	chr9:139620499..139624602-chr9:139683512..139688148,14	K562	blood:
18	chr9:139684641..139688491-chr9:139944424..139947811,3	K562	blood:
19	chr9:139655316..139662123-chr9:139682792..139687315,9	K562	blood:
20	chr9:139685272..139687236-chr9:139783437..139786045,2	MCF-7	breast:
21	chr9:139684091..139687398-chr9:139780288..139782193,3	K562	blood:
22	chr9:139686320..139689132-chr9:139920712..139922686,2	K562	blood:
23	chr9:139685305..139687370-chr9:139885305..139886970,2	MCF-7	breast:
24	chr9:139685184..139687112-chr9:139923073..139925089,2	K562	blood:
25	chr9:139685045..139687775-chr9:139838528..139840680,3	MCF-7	breast:
26	chr9:139682478..139689029-chr9:139739017..139745111,14	MCF-7	breast:
27	chr9:139685870..139687386-chr9:139979656..139982069,2	MCF-7	breast:
28	chr9:139684905..139687555-chr9:139781430..139784355,2	MCF-7	breast:
29	chr9:139684580..139687679-chr9:139885169..139891093,6	MCF-7	breast:
30	chr9:139684319..139687155-chr9:139837681..139840267,3	K562	blood:
31	chr9:139685326..139687361-chr9:139939628..139942072,2	MCF-7	breast:
32	chr9:139681106..139687354-chr9:139701145..139707280,8	K562	blood:
33	chr9:139685015..139687198-chr9:139901432..139904187,2	MCF-7	breast:
34	chr9:139682195..139706361-chr9:139728316..139752024,110	MCF-7	breast:

No data

Variant related genes	Relation type
CCDC183	TF binding region
ENSG00000228544	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000188986	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000214402	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000177984	Chromatin interaction
ENSG00000107317	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2492307	0.82[ASN][1000 genomes]
rs2498195	0.83[ASN][1000 genomes]
rs2784040	0.94[ASN][1000 genomes]
rs2784041	0.94[ASN][1000 genomes]
rs2784044	0.83[ASN][1000 genomes]
rs2784045	0.83[ASN][1000 genomes]
rs2784046	0.83[ASN][1000 genomes]
rs2784047	0.83[ASN][1000 genomes]
rs2784048	0.83[ASN][1000 genomes]
rs2784049	0.82[ASN][1000 genomes]
rs2784050	0.82[ASN][1000 genomes]
rs2784051	0.82[ASN][1000 genomes]
rs2784054	0.82[ASN][1000 genomes]
rs2784055	0.82[ASN][1000 genomes]
rs2784056	0.82[ASN][1000 genomes]
rs2784057	0.82[ASN][1000 genomes]
rs2784059	0.82[ASN][1000 genomes]
rs2784060	0.82[ASN][1000 genomes]
rs2811777	0.82[ASN][1000 genomes]
rs2811778	0.80[ASN][1000 genomes]
rs2811779	0.82[ASN][1000 genomes]
rs2811781	0.82[ASN][1000 genomes]
rs2811783	0.82[ASN][1000 genomes]
rs2811784	0.82[ASN][1000 genomes]
rs2811785	0.83[ASN][1000 genomes]
rs2811786	0.83[ASN][1000 genomes]
rs2811788	0.87[ASN][1000 genomes]
rs35342663	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57277737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62581400	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
4	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
5	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
6	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
7	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
8	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
9	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
10	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
11	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
12	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
13	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
15	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
16	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
17	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
18	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
19	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
20	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
21	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
22	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
23	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
24	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
25	nsv540348	chr9:139550414-139687876	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
26	nsv894450	chr9:139598108-139776400	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
27	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
28	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
29	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
30	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
31	nsv1051605	chr9:139620105-139728697	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
32	nsv540350	chr9:139620105-139728697	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
33	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
34	nsv466681	chr9:139647074-139693992	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
35	nsv615982	chr9:139647074-139693992	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
36	nsv894457	chr9:139650448-139776400	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
37	nsv540351	chr9:139664948-139703627	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
38	nsv523639	chr9:139669111-139690144	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
39	nsv894458	chr9:139683224-139776400	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
40	nsv894459	chr9:139683224-139787453	Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
41	nsv894460	chr9:139683224-139810595	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
42	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
43	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
44	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62581399	ENSG00000213213	cis	multi-tissue	Pritchard

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139685600-139688200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:139685800-139687200	Flanking Active TSS	HMEC	breast
3	chr9:139686000-139687200	Flanking Active TSS	Colonic Mucosa	Colon
4	chr9:139686000-139687200	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr9:139686000-139688400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
6	chr9:139686200-139687600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
7	chr9:139686400-139687200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:139686400-139687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:139686400-139687200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:139686400-139687200	Enhancers	Primary B cells from peripheral blood	blood
11	chr9:139686400-139687200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:139686400-139687200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:139686400-139687200	Enhancers	Esophagus	oesophagus
14	chr9:139686400-139687200	Enhancers	Left Ventricle	heart
15	chr9:139686400-139687200	Enhancers	Psoas Muscle	Psoas
16	chr9:139686400-139687400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:139686400-139687400	Enhancers	Spleen	Spleen
18	chr9:139686400-139687600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:139686400-139687600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr9:139686400-139687800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:139686400-139688800	Weak transcription	Aorta	Aorta
22	chr9:139686400-139690400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:139686400-139690800	Weak transcription	Fetal Kidney	kidney
24	chr9:139686400-139692400	Enhancers	Fetal Heart	heart
25	chr9:139686600-139687200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr9:139686600-139687200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:139686600-139687200	Enhancers	Liver	Liver
28	chr9:139686600-139687200	Enhancers	Brain Substantia Nigra	brain
29	chr9:139686600-139687200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:139686600-139687400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:139686600-139687400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr9:139686600-139687600	Genic enhancers	Fetal Muscle Leg	muscle
33	chr9:139686600-139687800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:139686600-139688000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:139686600-139688200	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr9:139686600-139688200	Genic enhancers	Placenta Amnion	Placenta Amnion
37	chr9:139686600-139688400	Transcr. at gene 5' and 3'	HepG2	liver
38	chr9:139686600-139689400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:139686600-139689400	Genic enhancers	Placenta	Placenta
40	chr9:139686600-139690600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:139686800-139687200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:139686800-139687200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:139686800-139687200	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr9:139686800-139687200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:139686800-139687200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:139686800-139687200	Genic enhancers	Brain Cingulate Gyrus	brain
47	chr9:139686800-139687200	Enhancers	Colon Smooth Muscle	Colon
48	chr9:139686800-139687200	Enhancers	Lung	lung
49	chr9:139686800-139687200	Genic enhancers	Right Ventricle	heart
50	chr9:139686800-139687200	Enhancers	Skeletal Muscle Male	skeletal muscle

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