Variant report

Variant	rs2787171
Chromosome Location	chr9:26170721-26170722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2006491	0.81[AFR][1000 genomes]
rs2250791	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571527	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2571528	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2571529	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2787173	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2787174	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892845	chr9:26121103-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv892846	chr9:26127824-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv892847	chr9:26134888-26210141	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv892848	chr9:26151961-26191574	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv613928	chr9:26154827-26194166	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26168600-26172200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:26169000-26171600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:26169200-26175600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:26169400-26171000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:26169600-26170800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:26169600-26170800	Enhancers	Hela-S3	cervix
7	chr9:26169600-26170800	Enhancers	HSMMtube	muscle
8	chr9:26169600-26170800	Enhancers	NH-A	brain
9	chr9:26169600-26171000	Enhancers	HSMM	muscle
10	chr9:26169800-26170800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:26169800-26170800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:26169800-26170800	Enhancers	HMEC	breast
13	chr9:26169800-26172400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:26170000-26170800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:26170000-26170800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:26170000-26170800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:26170000-26170800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:26170000-26171000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:26170200-26172200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:26170200-26176400	Enhancers	NHDF-Ad	bronchial
21	chr9:26170400-26170800	Enhancers	A549	lung
22	chr9:26170600-26170800	Enhancers	Adipose Nuclei	Adipose
23	chr9:26170600-26171000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:26170600-26171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:26170600-26171600	Weak transcription	NHEK	skin

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