Variant report

Variant	rs2789309
Chromosome Location	chr10:19328383-19328384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10826807	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10826808	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10826809	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10826871	0.97[ASN][1000 genomes]
rs11007884	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11007917	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11007920	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11008082	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11008093	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11008133	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11008149	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11008173	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11008219	0.98[ASN][1000 genomes]
rs1339052	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1361291	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1361295	0.82[EUR][1000 genomes]
rs2211101	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225962	1.00[ASN][1000 genomes]
rs2813779	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2813780	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2813781	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813782	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813783	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813784	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951271	0.83[EUR][1000 genomes]
rs7073111	0.98[ASN][1000 genomes]
rs72785281	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72785283	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72787407	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv466763	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470925	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1039061	chr10:19301914-19334758	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv1038358	chr10:19319711-19344810	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1049708	chr10:19319711-19347070	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1043004	chr10:19319970-19344810	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv516123	chr10:19320793-19344979	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv550127	chr10:19320793-19344979	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19323600-19335400	Weak transcription	Fetal Intestine Small	intestine

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