The 2.0 version of rSNPBase

Variant report

Variant rs2790049
Chromosome Location chr1:165743523-165743524
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165738800-165744800 Weak transcription Spleen Spleen
2 chr1:165738800-165745200 Weak transcription Gastric stomach
3 chr1:165739000-165745000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:165739000-165745200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:165739200-165744600 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr1:165739200-165744800 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:165739200-165745200 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr1:165739200-165745400 Weak transcription Brain Anterior Caudate brain
9 chr1:165739200-165745400 Weak transcription Right Ventricle heart
10 chr1:165739200-165745600 Weak transcription Fetal Intestine Small intestine
11 chr1:165739200-165745600 Weak transcription Lung lung
12 chr1:165739200-165746000 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:165739400-165743600 Weak transcription Small Intestine intestine
14 chr1:165739400-165744400 Weak transcription Left Ventricle heart
15 chr1:165739400-165744600 Weak transcription Primary B cells from cord blood blood
16 chr1:165739400-165744800 Weak transcription Primary monocytes fromperipheralblood blood
17 chr1:165739400-165744800 Weak transcription Fetal Lung lung
18 chr1:165739400-165745600 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr1:165739600-165744200 Weak transcription Aorta Aorta
20 chr1:165739600-165744600 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:165739600-165744600 Weak transcription Fetal Brain Male brain
22 chr1:165739600-165744800 Weak transcription Primary T cells from cord blood blood
23 chr1:165739600-165744800 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr1:165739600-165745000 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr1:165739600-165745400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:165739600-165745400 Weak transcription Pancreas Pancrea
27 chr1:165739600-165745600 Weak transcription Fetal Muscle Leg muscle
28 chr1:165740000-165745200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr1:165740000-165745400 Weak transcription Primary T killer memory cells from peripheral blood blood
30 chr1:165740000-165747800 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr1:165740200-165744000 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr1:165740200-165744600 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:165740200-165744600 Weak transcription Dnd41 blood
34 chr1:165740200-165744800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr1:165740200-165744800 Weak transcription Duodenum Mucosa Duodenum
36 chr1:165740200-165744800 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:165740200-165745400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:165740200-165745400 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr1:165740200-165745600 Weak transcription Liver Liver
40 chr1:165740200-165745600 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:165740400-165743800 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr1:165741000-165745600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr1:165742000-165744200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:165742000-165745200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:165742600-165744000 Strong transcription H1 Cell Line embryonic stem cell
46 chr1:165742600-165744000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:165742600-165744000 Strong transcription Fetal Muscle Trunk muscle
48 chr1:165742600-165744600 Strong transcription Rectal Mucosa Donor 29 rectum
49 chr1:165742600-165745200 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:165742800-165743600 Strong transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015