Variant report

Variant	rs10800154
Chromosome Location	chr1:165714742-165714743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165699986..165702964-chr1:165714611..165716642,2	K562	blood:
2	chr1:165712050..165713771-chr1:165714315..165716947,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10800153	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10800155	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10918274	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12133745	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12691499	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12691500	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1547725	0.80[AMR][1000 genomes]
rs2790049	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2790052	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2790053	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2814471	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28504591	0.85[AMR][1000 genomes]
rs4233408	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4537525	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4603103	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4656460	0.80[AMR][1000 genomes]
rs4656461	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4657471	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4657472	0.80[AMR][1000 genomes]
rs4657474	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4657475	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4657476	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4657477	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6426936	0.84[AMR][1000 genomes]
rs6660601	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6662839	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6668108	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6668885	0.82[EUR][1000 genomes]
rs6696454	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7518099	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7524755	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7528177	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7555523	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv518886	chr1:165714187-165741646	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165685200-165721600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165687600-165737600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:165694200-165721600	Weak transcription	Aorta	Aorta
4	chr1:165694200-165721600	Weak transcription	Esophagus	oesophagus
5	chr1:165694400-165721600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:165694600-165736800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:165696000-165721600	Weak transcription	Gastric	stomach
8	chr1:165699800-165721600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:165705000-165724800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:165705200-165715800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:165706800-165715000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:165707400-165718200	Strong transcription	Primary T cells from cord blood	blood
13	chr1:165707600-165714800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:165707600-165721600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:165707800-165714800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:165707800-165715400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr1:165707800-165717800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:165708000-165715000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:165708000-165715800	Strong transcription	Fetal Muscle Leg	muscle
20	chr1:165708000-165721200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:165708200-165718200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:165708200-165721600	Weak transcription	Right Atrium	heart
23	chr1:165708400-165715600	Strong transcription	Fetal Stomach	stomach
24	chr1:165708400-165718200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:165708600-165715200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr1:165708800-165715400	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:165708800-165716200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:165708800-165717400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:165708800-165721600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:165709200-165718400	Strong transcription	Primary B cells from cord blood	blood
31	chr1:165709200-165720600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr1:165709400-165715600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr1:165709400-165718200	Strong transcription	Adipose Nuclei	Adipose
34	chr1:165709600-165718400	Strong transcription	Dnd41	blood
35	chr1:165710000-165715000	Strong transcription	HSMM	muscle
36	chr1:165710400-165721600	Weak transcription	Stomach Mucosa	stomach
37	chr1:165710400-165727000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:165711200-165715000	Strong transcription	A549	lung
39	chr1:165711200-165715600	Strong transcription	Fetal Intestine Small	intestine
40	chr1:165711200-165721600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:165711200-165721600	Weak transcription	Fetal Heart	heart
42	chr1:165711200-165736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr1:165711400-165722000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr1:165712000-165719800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:165712000-165721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:165712000-165721600	Weak transcription	Pancreas	Pancrea
47	chr1:165712000-165721600	Weak transcription	Right Ventricle	heart
48	chr1:165712200-165721600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr1:165712200-165721600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr1:165712200-165721600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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