Variant report

Variant	rs6426936
Chromosome Location	chr1:165684707-165684708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165684207..165686367-chr1:165693698..165695940,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10800135	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10800153	0.86[AMR][1000 genomes]
rs10800154	0.84[AMR][1000 genomes]
rs10800155	1.00[JPT][hapmap]
rs12133745	0.86[AMR][1000 genomes]
rs12403369	1.00[JPT][hapmap]
rs1547725	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251768	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2790052	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2790053	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs2814466	1.00[JPT][hapmap]
rs2814471	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4537525	1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs4603103	0.86[AMR][1000 genomes]
rs4656460	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656461	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes]
rs4657471	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4657474	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4657475	0.84[AMR][1000 genomes]
rs4657476	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[AMR][1000 genomes]
rs4657477	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[AMR][1000 genomes]
rs6660601	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs6662839	0.82[AMR][1000 genomes]
rs6668108	0.84[AMR][1000 genomes]
rs6696454	0.91[CEU][hapmap];0.86[AMR][1000 genomes]
rs7518099	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[AMR][1000 genomes]
rs7524755	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs7555523	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165684400-165685200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:165684400-165687600	Enhancers	Liver	Liver
3	chr1:165684600-165685200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:165684600-165685200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:165684600-165685200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:165684600-165685400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links