Variant report

Variant	rs2792666
Chromosome Location	chr6:24361189-24361190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:24359798-24361222	A549	lung:	n/a	chr6:24360076-24360089 chr6:24360074-24360092 chr6:24360076-24360089 chr6:24360075-24360091

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24360427..24362179-chr6:24370310..24373267,2	MCF-7	breast:

Variant related genes	Relation type
RNU6-391P	TF binding region
DCDC2	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1087266	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1277337	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1277348	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2753916	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs793664	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793697	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793708	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793711	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793719	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs813227	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24359000-24362800	Weak transcription	HepG2	liver
2	chr6:24360600-24361200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:24360600-24361200	Bivalent Enhancer	Fetal Heart	heart
4	chr6:24360600-24361200	Flanking Active TSS	A549	lung
5	chr6:24360800-24361200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:24360800-24361200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:24360800-24361200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:24360800-24361200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:24360800-24361200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:24360800-24361200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:24360800-24361200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:24360800-24361400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:24360800-24361600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:24360800-24361600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:24360800-24363400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:24361000-24361200	Active TSS	Brain Anterior Caudate	brain
17	chr6:24361000-24361200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:24361000-24361400	Bivalent Enhancer	Primary T cells from cord blood	blood
19	chr6:24361000-24361400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:24361000-24361600	Enhancers	Fetal Intestine Small	intestine
21	chr6:24361000-24362000	Weak transcription	Fetal Kidney	kidney

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