Variant report

Variant	rs793719
Chromosome Location	chr6:24354887-24354888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1087266	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277337	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1277348	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2753916	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792666	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793664	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs793697	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793708	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs793711	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793720	0.80[AFR][1000 genomes]
rs793721	0.80[AFR][1000 genomes]
rs813227	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs793719	MRS2L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24339600-24355600	Weak transcription	Pancreas	Pancrea
2	chr6:24341200-24357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24345800-24356800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:24347000-24357000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24353200-24358800	Active TSS	Fetal Kidney	kidney
6	chr6:24354200-24355400	Flanking Active TSS	HepG2	liver
7	chr6:24354200-24355600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:24354200-24358800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:24354800-24358800	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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