Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485429	0.94[CEU][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10485430	0.94[CEU][hapmap]
rs10945150	0.93[CEU][hapmap]
rs11751150	0.94[CEU][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754397	0.94[CEU][hapmap];0.83[ASN][1000 genomes]
rs11962923	0.94[CEU][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529202	0.83[ASN][1000 genomes]
rs12529244	0.94[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17401221	0.94[CEU][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2785571	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3757048	0.83[ASN][1000 genomes]
rs3799001	0.94[CEU][hapmap]
rs3799009	0.94[CEU][hapmap];0.83[ASN][1000 genomes]
rs3799011	0.94[CEU][hapmap];0.83[ASN][1000 genomes]
rs55924387	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62416762	0.83[ASN][1000 genomes]
rs62416764	0.83[ASN][1000 genomes]
rs62416780	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62416804	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416805	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416808	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62418324	0.83[ASN][1000 genomes]
rs72901517	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
4	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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