Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10485429	0.94[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10485430	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945150	0.93[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11751150	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs11754397	0.94[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962923	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12529202	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529244	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs17401221	0.94[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2793457	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3757048	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3799001	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3799009	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3799011	0.94[CEU][hapmap];0.88[CHB][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60671712	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62416762	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416764	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416780	0.80[ASN][1000 genomes]
rs62418324	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7757138	0.89[CHB][hapmap]
rs9446078	0.89[CHB][hapmap]
rs9454658	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
6	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69728800-69730800	Enhancers	HUVEC	blood vessel
8	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:69729600-69730800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:69729600-69732600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:69729800-69733200	Weak transcription	Osteobl	bone
12	chr6:69730000-69732600	Weak transcription	NH-A	brain
13	chr6:69730000-69732800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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