Variant report

Variant	rs9454658
Chromosome Location	chr6:69669003-69669004
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1336644	0.92[CEU][hapmap]
rs1959407	0.90[CEU][hapmap]
rs2785571	0.89[CHB][hapmap]
rs7754659	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9446078	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs9446082	0.88[CEU][hapmap]
rs9446083	0.88[CHB][hapmap]
rs9454659	1.00[CEU][hapmap];0.88[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454663	0.92[CEU][hapmap]
rs9454664	0.83[CEU][hapmap]
rs9454667	0.91[CEU][hapmap]
rs9454669	0.92[CEU][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69652800-69672800	Weak transcription	Fetal Brain Male	brain
7	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69659600-69669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:69666800-69672800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:69667600-69672200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:69668000-69675000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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