Variant report

Variant	rs9454667
Chromosome Location	chr6:69702416-69702417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10485427	0.83[CHD][hapmap]
rs10485429	0.85[CHD][hapmap]
rs10485430	0.92[CHD][hapmap]
rs10945150	0.85[CHD][hapmap]
rs11759629	0.91[CHD][hapmap]
rs11962923	0.85[CHD][hapmap]
rs1336644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415031	0.81[CEU][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1959407	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798977	0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs60944895	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906771	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754659	0.91[CEU][hapmap]
rs7757138	0.91[CEU][hapmap]
rs9360376	0.83[CHD][hapmap]
rs9446078	0.96[CEU][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9446082	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446083	0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[ASN][1000 genomes]
rs9446084	0.90[ASN][1000 genomes]
rs9454658	0.91[CEU][hapmap]
rs9454659	0.91[CEU][hapmap]
rs9454663	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9454664	0.93[ASW][hapmap];0.92[CEU][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9454669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
4	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
5	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
6	chr6:69695200-69704400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69696200-69703400	Weak transcription	Fetal Brain Female	brain
8	chr6:69696400-69715400	Weak transcription	Aorta	Aorta
9	chr6:69700800-69710200	Weak transcription	Brain Anterior Caudate	brain
10	chr6:69701000-69703800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:69701000-69706200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
16	chr6:69702000-69702600	Enhancers	Brain Substantia Nigra	brain
17	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain

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