Variant report

Variant	rs9446082
Chromosome Location	chr6:69698642-69698643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1336644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415031	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1959407	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798977	0.90[EUR][1000 genomes]
rs60944895	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906771	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754659	0.88[CEU][hapmap]
rs7757138	0.87[CEU][hapmap]
rs9446078	0.92[CEU][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9446083	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs9446084	0.90[ASN][1000 genomes]
rs9454658	0.88[CEU][hapmap]
rs9454659	0.88[CEU][hapmap]
rs9454663	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9454664	0.87[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9454667	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685000-69700000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
4	chr6:69686000-69700000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69686000-69700400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:69686000-69700600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:69686600-69700200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
10	chr6:69687800-69700400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
12	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
13	chr6:69695200-69704400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:69695600-69700200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:69695800-69700200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:69696200-69703400	Weak transcription	Fetal Brain Female	brain
17	chr6:69696400-69715400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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