Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69699072..69700875-chr6:69703905..69706517,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1336644	0.80[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16900354	0.82[JPT][hapmap]
rs16900381	1.00[JPT][hapmap]
rs16900396	1.00[JPT][hapmap]
rs16900417	1.00[JPT][hapmap]
rs1959407	1.00[GIH][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2275209	1.00[JPT][hapmap]
rs3798977	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs3798979	0.82[CEU][hapmap]
rs3798981	1.00[JPT][hapmap]
rs3799005	1.00[JPT][hapmap]
rs3799006	1.00[JPT][hapmap]
rs3823064	0.82[CEU][hapmap]
rs60944895	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72906771	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9446078	0.82[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs9446082	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9454663	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9454664	0.88[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9454667	0.81[CEU][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9454669	0.80[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
3	chr6:69686000-69700400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69686000-69700600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
7	chr6:69687800-69700400	Weak transcription	Brain Germinal Matrix	brain
8	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
9	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
10	chr6:69695200-69704400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:69696200-69703400	Weak transcription	Fetal Brain Female	brain
12	chr6:69696400-69715400	Weak transcription	Aorta	Aorta
13	chr6:69700000-69700400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:69700000-69701000	Enhancers	Brain Hippocampus Middle	brain
15	chr6:69700000-69702400	Enhancers	Brain Angular Gyrus	brain
16	chr6:69700200-69701000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:69700200-69701000	Enhancers	Brain Substantia Nigra	brain
18	chr6:69700200-69701200	Enhancers	Brain Cingulate Gyrus	brain

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