Variant report

Variant	rs9446078
Chromosome Location	chr6:69674870-69674871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485430	0.84[CHD][hapmap]
rs1336644	0.96[CEU][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1415031	0.82[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs1959407	0.90[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785571	0.89[CHB][hapmap]
rs3798977	0.88[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60944895	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72906771	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7754659	0.96[CEU][hapmap];0.88[CHB][hapmap];0.80[YRI][hapmap]
rs7757138	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs9446082	0.92[CEU][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9446083	0.88[CHB][hapmap];0.92[CHD][hapmap];0.94[ASN][1000 genomes]
rs9446084	0.94[ASN][1000 genomes]
rs9454658	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs9454659	0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs9454663	0.96[CEU][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9454664	0.87[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs9454667	0.96[CEU][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9454669	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:69668000-69675000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:69672200-69675800	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:69674000-69677800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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