Variant report

Variant	rs9454664
Chromosome Location	chr6:69683474-69683475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485430	0.92[CHD][hapmap]
rs11759629	0.91[CHD][hapmap]
rs1336644	0.91[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415031	0.88[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1959407	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3798977	0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs60944895	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72906771	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754659	0.83[CEU][hapmap]
rs7757138	0.83[CEU][hapmap]
rs9446078	0.87[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs9446082	0.87[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9454658	0.83[CEU][hapmap]
rs9454659	0.83[CEU][hapmap]
rs9454663	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9454667	0.93[ASW][hapmap];0.92[CEU][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9454669	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3368681	chr6:69682552-69687715	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69681000-69684200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69682800-69684600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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