Variant report

Variant	rs2795303
Chromosome Location	chr6:142590753-142590754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1475772	0.88[CEU][hapmap];0.95[CHB][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1931989	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931990	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328322	0.89[ASN][1000 genomes]
rs2782533	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2782538	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2795306	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7745188	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs9321859	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs9484606	0.84[ASN][1000 genomes]
rs9496306	0.87[ASN][1000 genomes]
rs9496309	0.90[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5511	chr6:142550032-142594960	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2795303	CITED2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142590600-142597000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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