Variant report
| Variant | rs2797092 |
|---|---|
| Chromosome Location | chr1:73011443-73011444 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10493500 | 0.91[ASN][1000 genomes] |
| rs11209979 | 0.90[EUR][1000 genomes] |
| rs12058373 | 0.90[EUR][1000 genomes] |
| rs12092712 | 0.90[EUR][1000 genomes] |
| rs12408431 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1373912 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1373919 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1445583 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1445587 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1613435 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17529262 | 0.91[ASN][1000 genomes] |
| rs17529888 | 0.91[ASN][1000 genomes] |
| rs17529967 | 0.91[ASN][1000 genomes] |
| rs17543124 | 0.84[EUR][1000 genomes] |
| rs17544161 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17601288 | 0.91[ASN][1000 genomes] |
| rs1822972 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2244695 | 0.86[EUR][1000 genomes] |
| rs4587520 | 0.86[EUR][1000 genomes] |
| rs61771801 | 0.91[ASN][1000 genomes] |
| rs61771830 | 0.91[ASN][1000 genomes] |
| rs61771846 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61774462 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7551627 | 0.91[ASN][1000 genomes] |
| rs895279 | 0.80[EUR][1000 genomes] |
| rs895281 | 0.91[EUR][1000 genomes] |
| rs986380 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422432 | chr1:72821856-73148651 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv830215 | chr1:72869049-73029787 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv546563 | chr1:72956037-73041879 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv871074 | chr1:72987229-73100055 | Flanking Active TSS Enhancers Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1005157 | chr1:73007962-73088158 | Enhancers Weak transcription Active TSS Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv1000359 | chr1:73008167-73088158 | Enhancers Active TSS Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv546564 | chr1:73010123-73101763 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:73011400-73014000 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
