Variant report

Variant	rs61774462
Chromosome Location	chr1:73051808-73051809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10493500	0.91[ASN][1000 genomes]
rs11209979	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12058373	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12092712	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12408431	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1373912	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1373919	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1445583	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1445587	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1613435	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17529262	0.91[ASN][1000 genomes]
rs17529888	0.91[ASN][1000 genomes]
rs17529967	0.91[ASN][1000 genomes]
rs17544161	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17601288	0.91[ASN][1000 genomes]
rs1822972	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2244695	0.89[EUR][1000 genomes]
rs2797092	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4587520	0.89[EUR][1000 genomes]
rs61771801	0.91[ASN][1000 genomes]
rs61771830	0.91[ASN][1000 genomes]
rs61771846	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551627	0.91[ASN][1000 genomes]
rs895281	0.85[EUR][1000 genomes]
rs986380	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv871074	chr1:72987229-73100055	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005157	chr1:73007962-73088158	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1000359	chr1:73008167-73088158	Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv546564	chr1:73010123-73101763	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1000283	chr1:73011908-73088158	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv432157	chr1:73012179-73088158	Weak transcription Enhancers Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	esv2750838	chr1:73012179-73088179	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
9	esv2750839	chr1:73012179-73088179	Flanking Active TSS Weak transcription Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv432046	chr1:73012179-73088179	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	nsv1011385	chr1:73012228-73088158	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
12	nsv432268	chr1:73012228-73088158	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
13	nsv997766	chr1:73012604-73088158	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv1001781	chr1:73012777-73088158	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv1007535	chr1:73014642-73088158	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv546565	chr1:73015588-73090608	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv516582	chr1:73021243-73084221	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a
19	nsv546566	chr1:73040590-73079152	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	nsv546567	chr1:73041879-73075810	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv2830088	chr1:73048685-73082539	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
22	nsv871371	chr1:73048685-73152104	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73051600-73052400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links