Variant report

Variant	rs2797249
Chromosome Location	chr1:215861469-215861470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2364861	0.83[CEU][hapmap]
rs2797220	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2797238	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2820673	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs2820674	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2820688	0.94[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs2820699	0.88[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs3927749	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2763680	chr1:215855883-215870683	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv549183	chr1:215860464-215861757	Inactive region	Chromatin interactive region	n/a	n/a	diseases
5	esv2756291	chr1:215860464-215861879	Inactive region	Chromatin interactive region	n/a	n/a	diseases
6	nsv549184	chr1:215860464-215862899	Inactive region	Chromatin interactive region	n/a	n/a	diseases
7	nsv549185	chr1:215860464-215863578	Inactive region	Chromatin interactive region	n/a	n/a	diseases
8	nsv549186	chr1:215861056-215861757	Inactive region	Chromatin interactive region	n/a	n/a	diseases
9	nsv549187	chr1:215861205-215861757	Inactive region	Chromatin interactive region	n/a	n/a	diseases
10	nsv549188	chr1:215861337-215861757	Inactive region	Chromatin interactive region	n/a	n/a	diseases
11	nsv549189	chr1:215861388-215861757	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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