Variant report
| Variant | rs2820699 |
|---|---|
| Chromosome Location | chr1:215863578-215863579 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12092186 | 0.88[YRI][hapmap] |
| rs12097755 | 1.00[CHB][hapmap] |
| rs1342764 | 1.00[CHD][hapmap] |
| rs2797220 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs2797238 | 0.87[CEU][hapmap];0.89[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2797249 | 0.88[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap] |
| rs2820673 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2820674 | 0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2820688 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430324 | chr1:215649163-216082605 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv873171 | chr1:215825167-215925167 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2763680 | chr1:215855883-215870683 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv549185 | chr1:215860464-215863578 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
