Variant report

Variant	rs2799344
Chromosome Location	chr13:53665737-53665738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs12864008	0.82[ASN][1000 genomes]
rs12865218	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12866736	0.82[ASN][1000 genomes]
rs12867491	0.85[EUR][1000 genomes]
rs12868253	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12869523	0.85[EUR][1000 genomes]
rs12870777	0.85[EUR][1000 genomes]
rs12871248	0.85[EUR][1000 genomes]
rs12874939	0.85[EUR][1000 genomes]
rs12876105	0.85[EUR][1000 genomes]
rs12876387	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12876786	0.82[EUR][1000 genomes]
rs12877178	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12877599	0.85[EUR][1000 genomes]
rs12877758	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12877912	0.82[EUR][1000 genomes]
rs1343608	0.85[EUR][1000 genomes]
rs17053844	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17053849	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17053872	0.83[ASN][1000 genomes]
rs17054812	0.85[EUR][1000 genomes]
rs17054937	0.82[EUR][1000 genomes]
rs1891947	0.82[ASN][1000 genomes]
rs2799345	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34030659	0.85[EUR][1000 genomes]
rs34031649	0.85[EUR][1000 genomes]
rs34059997	0.85[EUR][1000 genomes]
rs34110102	0.82[ASN][1000 genomes]
rs34163916	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34201111	0.85[EUR][1000 genomes]
rs34211399	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34298498	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34330988	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34374288	0.82[ASN][1000 genomes]
rs34531708	0.85[EUR][1000 genomes]
rs34557321	0.82[EUR][1000 genomes]
rs34642277	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34687272	0.85[EUR][1000 genomes]
rs34708622	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34756826	0.82[EUR][1000 genomes]
rs34902019	0.85[EUR][1000 genomes]
rs35003538	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35007240	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35114755	0.85[EUR][1000 genomes]
rs35121580	0.82[ASN][1000 genomes]
rs35226075	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35340650	0.82[EUR][1000 genomes]
rs35397855	0.83[ASN][1000 genomes]
rs35472513	0.83[ASN][1000 genomes]
rs35575822	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35625606	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35666947	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35727089	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35756659	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35765587	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35800707	0.82[EUR][1000 genomes]
rs36081995	0.82[ASN][1000 genomes]
rs55972529	0.85[EUR][1000 genomes]
rs57273256	0.85[EUR][1000 genomes]
rs57454139	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59297590	0.85[EUR][1000 genomes]
rs59345770	0.82[ASN][1000 genomes]
rs59513810	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59960345	0.85[EUR][1000 genomes]
rs60408242	0.85[EUR][1000 genomes]
rs61950074	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61950079	0.85[EUR][1000 genomes]
rs61950086	0.85[EUR][1000 genomes]
rs61950491	0.82[ASN][1000 genomes]
rs61950492	0.83[ASN][1000 genomes]
rs61950504	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61950522	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6561705	0.80[EUR][1000 genomes]
rs6561706	0.85[EUR][1000 genomes]
rs6561707	0.85[EUR][1000 genomes]
rs7320513	0.85[EUR][1000 genomes]
rs74086489	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7998204	0.85[EUR][1000 genomes]
rs9563136	0.82[EUR][1000 genomes]
rs9563137	0.82[EUR][1000 genomes]
rs9563138	0.82[EUR][1000 genomes]
rs9568814	0.82[EUR][1000 genomes]
rs9568815	0.82[EUR][1000 genomes]
rs9568816	0.82[EUR][1000 genomes]
rs9568817	0.82[EUR][1000 genomes]
rs9568820	0.82[EUR][1000 genomes]
rs9568821	0.82[EUR][1000 genomes]
rs9568822	0.82[EUR][1000 genomes]
rs9568823	0.82[EUR][1000 genomes]
rs9568824	0.82[EUR][1000 genomes]
rs9568825	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53658600-53666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:53664200-53665800	Enhancers	Fetal Heart	heart
3	chr13:53664200-53666000	Enhancers	Brain Germinal Matrix	brain
4	chr13:53664600-53667000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:53664800-53665800	Weak transcription	Brain Substantia Nigra	brain
6	chr13:53665000-53666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:53665000-53667000	Weak transcription	Brain Angular Gyrus	brain
8	chr13:53665200-53667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:53665200-53667000	Weak transcription	Brain Hippocampus Middle	brain
10	chr13:53665600-53667000	Weak transcription	Pancreas	Pancrea

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