The 2.0 version of rSNPBase

Variant report

Variant rs2799554
Chromosome Location chr1:77775731-77775732
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77749000-77779200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:77749200-77778400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr1:77749400-77781600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr1:77754400-77785800 Weak transcription Brain Cingulate Gyrus brain
5 chr1:77755200-77781600 Weak transcription Osteobl bone
6 chr1:77755800-77788200 Weak transcription HSMMtube muscle
7 chr1:77756800-77781600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:77757600-77777400 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr1:77758000-77778400 Weak transcription Brain Angular Gyrus brain
10 chr1:77759000-77781600 Weak transcription NHLF lung
11 chr1:77767600-77776600 Weak transcription Muscle Satellite Cultured Cells --
12 chr1:77771800-77780200 Strong transcription NHDF-Ad bronchial
13 chr1:77772400-77776000 Enhancers Primary T helper naive cells fromperipheralblood blood
14 chr1:77772600-77776200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
15 chr1:77772800-77777800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:77773400-77776000 Enhancers Primary T killer memory cells from peripheral blood blood
17 chr1:77773800-77777000 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr1:77774000-77790400 Weak transcription Brain Substantia Nigra brain
19 chr1:77774200-77776000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr1:77774200-77776000 Enhancers Primary T regulatory cells fromperipheralblood blood
21 chr1:77774600-77775800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:77774600-77776000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:77774600-77776200 Enhancers Primary hematopoietic stem cells blood
24 chr1:77774600-77778200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:77774600-77778600 Weak transcription HSMM muscle
26 chr1:77774600-77779200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:77774800-77776000 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr1:77774800-77776000 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr1:77774800-77778400 Weak transcription Primary T cells fromperipheralblood blood
30 chr1:77774800-77787200 Weak transcription Brain Hippocampus Middle brain
31 chr1:77775200-77776200 Enhancers Primary T helper cells PMA-I stimulated --
32 chr1:77775200-77776400 Enhancers Primary T helper cells fromperipheralblood blood
33 chr1:77775200-77778400 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:77775400-77777400 Enhancers Primary T cells from cord blood blood

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Last update: Aug 31, 2015