Variant report

Variant	rs2815332
Chromosome Location	chr1:77736509-77736510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11162292	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11162293	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11162295	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1167207	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs1167218	0.92[ASN][1000 genomes]
rs1253220	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1253221	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1721161	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1851736	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1988302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602930	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602943	0.91[EUR][1000 genomes]
rs2602945	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs2602946	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs2602948	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2602952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689676	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2689683	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2799550	0.81[EUR][1000 genomes]
rs2799554	0.83[EUR][1000 genomes]
rs2799555	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2799556	0.83[EUR][1000 genomes]
rs2799558	0.83[EUR][1000 genomes]
rs2799559	0.83[EUR][1000 genomes]
rs2799560	0.83[EUR][1000 genomes]
rs2799561	0.83[EUR][1000 genomes]
rs2799562	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2815309	0.86[EUR][1000 genomes]
rs2815310	0.86[EUR][1000 genomes]
rs2815311	0.86[EUR][1000 genomes]
rs2815314	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs2815317	0.83[EUR][1000 genomes]
rs2815319	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs4949783	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77736400-77740600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links