Variant report

Variant	rs2802403
Chromosome Location	chr13:47692291-47692292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:47684408..47686677-chr13:47691245..47693344,2	K562	blood:
2	chr13:47684963..47687242-chr13:47691037..47693972,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7329703	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8001526	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47683800-47695200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:47685800-47694800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:47686600-47695200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:47687400-47693400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:47688200-47695800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:47688400-47693200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:47688600-47692600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:47688600-47693400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:47688600-47694000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:47688600-47694600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:47688600-47694600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:47688800-47693200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:47688800-47695600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:47689200-47693200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:47690400-47694400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:47690600-47695800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:47691200-47692800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:47691800-47693200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:47691800-47693200	Enhancers	K562	blood
20	chr13:47691800-47693400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr13:47692000-47695400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr13:47692200-47693800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:47692200-47694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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